PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G039304.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family GATA
Protein Properties Length: 278aa    MW: 30681.8 Da    PI: 7.2231
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G039304.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.11e-17176210135
                  GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                           C++C + kTp+WR gp g+ktLCnaCG++y++ +l
  HL.SW.v1.0.G039304.1 176 CTHCASEKTPQWRTGPMGPKTLCNACGVRYKSGRL 210
                           *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169923.8E-823267IPR016679Transcription factor, GATA, plant
SMARTSM004014.6E-17170220IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.82170206IPR000679Zinc finger, GATA-type
SuperFamilySSF577168.08E-15173234No hitNo description
Gene3DG3DSA:3.30.50.105.8E-14174208IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.39E-13175222No hitNo description
PfamPF003201.4E-15176210IPR000679Zinc finger, GATA-type
PROSITE patternPS003440176201IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009416Biological Processresponse to light stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MDHVYGSLPT HQQDCFGIDD LLDFSNNEDN QFLSSSSNSD VPHHHHYLPP LLPQTSASAH  60
FLNTPDFTSD LCVPSDDVAE LEWLSRFVDD SFYDLPTGEI PGALTYPNDA SFSGRARSKR  120
SRVPITGANT SWGSISTPPP ELESSSSIAA KTKSKREASP SNVNAASSAS GGARRCTHCA  180
SEKTPQWRTG PMGPKTLCNA CGVRYKSGRL VPEYRPAASP TFVLTQHSNS HRKVMELRRQ  240
KEMTRQPPLP QQQAEQEQHH PQQRGQFYSH HHGFQVC*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00415DAPTransfer from AT3G60530Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015889433.11e-94GATA transcription factor 4
SwissprotO497411e-72GATA2_ARATH; GATA transcription factor 2
SwissprotO497431e-72GATA4_ARATH; GATA transcription factor 4
TrEMBLA0A2P5CJF91e-108A0A2P5CJF9_PARAD; GATA transcription factor
STRINGXP_010089251.14e-90(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF135501925
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60530.15e-67GATA transcription factor 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Jiang K,Yung V,Chiba T,Feldman LJ
    Longitudinal patterning in roots: a GATA2-auxin interaction underlies and maintains the root transition domain.
    Planta, 2018. 247(4): p. 831-843
    [PMID:29249045]