PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G039292.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family Dof
Protein Properties Length: 331aa    MW: 36221.6 Da    PI: 7.4834
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G039292.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof127.63.7e-402586263
                zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63
                          +e+alkcprCdstntkfCyynnysl+qPryfCkaCrryWtkGG+lrnvPvGgg+r+nk+sss
  HL.SW.v1.0.G039292.1 25 PEQALKCPRCDSTNTKFCYYNNYSLTQPRYFCKACRRYWTKGGTLRNVPVGGGCRRNKRSSS 86
                          6899******************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074788.0E-302383IPR003851Zinc finger, Dof-type
PfamPF027011.5E-332783IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.5162983IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103167IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MSSDSLGNML VGSKPQQERK PRPHPEQALK CPRCDSTNTK FCYYNNYSLT QPRYFCKACR  60
RYWTKGGTLR NVPVGGGCRR NKRSSSSSSS SATSSSSKLR AQDNSLTPNP NPLLAHLQVP  120
ILAYDSNDLS LAFARLQKQS CGQLGFDDHD HHHLSILGNP VSSSHCDDHN QILGINNLGI  180
NNNGGSGFLD ALRNGFLESQ NHSNMYYGFG NGNGNGHNLE NGVGHGDQNM GQMSYNDDHD  240
HQEMINNNNG TTAAVTVTTI KQELGHGMRS SSDHHDHQSR VLWGCPWQLN GSSDNQYHGG  300
MADIDHTAGR ESWNGLTSSW HGLLNSTPLM *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM3665466e-60HM366546.1 Prunus persica clone PpDOF1 Dof-type zinc finger domain-containing protein mRNA, complete cds.
GenBankHM3665476e-60HM366547.1 Prunus persica clone PpDOF2 Dof-type zinc finger domain-containing protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010104144.21e-118dof zinc finger protein DOF2.1
TrEMBLA0A2P5CMS31e-169A0A2P5CMS3_PARAD; Zinc finger transcription factor
STRINGXP_010104144.11e-112(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50263051
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60200.14e-41TARGET OF MONOPTEROS 6