PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G039204.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | bHLH | ||||||||
Protein Properties | Length: 366aa MW: 40786.3 Da PI: 8.7211 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 29.3 | 1.5e-09 | 90 | 139 | 1 | 54 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r++ + rE+ RRdr+N+ f eL l ++ +K++Ka+iL+ ++ +k+L HL.SW.v1.0.G039204.1 90 RKVQKADREKLRRDRLNEHFLELGNTLDHD----RPKNDKATILTDSIQMLKDL 139 5677889**********************8....79***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 2.4E-12 | 89 | 161 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 12.747 | 89 | 139 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 5.1E-13 | 90 | 159 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.34E-7 | 90 | 143 | No hit | No description |
Pfam | PF00010 | 3.2E-7 | 90 | 139 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.1E-7 | 95 | 145 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 366 aa Download sequence Send to blast |
MDHPKPLNLN NKLLAFAFGF CFFPKFFYLN SQIWEKQSPR PLTTLAMEQW KPGDYSAHSA 60 PSSSHLLSVP TSHSDSRQKT DVEVDPVAAR KVQKADREKL RRDRLNEHFL ELGNTLDHDR 120 PKNDKATILT DSIQMLKDLT AEVNKLKAEY ASLSEESREL TLEKNELREE KASLKSDIEN 180 LNVQYQQRVR VMFPWAAIDP SVVMGPTYSY PVPVPVPQGS ISFHPSSQPF PFFGAQNPVA 240 IPNPCSNFIQ YPTPAYLPVE QPTSQYASTS HISSKQDSRS KSSDQRKGSN AERGDGSTDV 300 ATDLELKMPG SSTQQDSSCG VSRKGKQSQR KERTTTNGSS TSRYSSQVHQ DSSSNSVGDV 360 RKSNN* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008336910.1 | 1e-159 | transcription factor bHLH121-like isoform X2 | ||||
Swissprot | Q9LT23 | 5e-75 | BH121_ARATH; Transcription factor bHLH121 | ||||
TrEMBL | A0A498KGZ8 | 1e-159 | A0A498KGZ8_MALDO; Uncharacterized protein | ||||
STRING | XP_008336910.1 | 1e-158 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2282 | 33 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19860.1 | 3e-59 | bHLH family protein |
Publications ? help Back to Top | |||
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