PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G039204.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family bHLH
Protein Properties Length: 366aa    MW: 40786.3 Da    PI: 8.7211
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G039204.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.31.5e-0990139154
                           CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                   HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                           r++ +  rE+ RRdr+N+ f eL   l ++     +K++Ka+iL+  ++ +k+L
  HL.SW.v1.0.G039204.1  90 RKVQKADREKLRRDRLNEHFLELGNTLDHD----RPKNDKATILTDSIQMLKDL 139
                           5677889**********************8....79***************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.102.4E-1289161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.74789139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.1E-1390159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.34E-790143No hitNo description
PfamPF000103.2E-790139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.1E-795145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MDHPKPLNLN NKLLAFAFGF CFFPKFFYLN SQIWEKQSPR PLTTLAMEQW KPGDYSAHSA  60
PSSSHLLSVP TSHSDSRQKT DVEVDPVAAR KVQKADREKL RRDRLNEHFL ELGNTLDHDR  120
PKNDKATILT DSIQMLKDLT AEVNKLKAEY ASLSEESREL TLEKNELREE KASLKSDIEN  180
LNVQYQQRVR VMFPWAAIDP SVVMGPTYSY PVPVPVPQGS ISFHPSSQPF PFFGAQNPVA  240
IPNPCSNFIQ YPTPAYLPVE QPTSQYASTS HISSKQDSRS KSSDQRKGSN AERGDGSTDV  300
ATDLELKMPG SSTQQDSSCG VSRKGKQSQR KERTTTNGSS TSRYSSQVHQ DSSSNSVGDV  360
RKSNN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008336910.11e-159transcription factor bHLH121-like isoform X2
SwissprotQ9LT235e-75BH121_ARATH; Transcription factor bHLH121
TrEMBLA0A498KGZ81e-159A0A498KGZ8_MALDO; Uncharacterized protein
STRINGXP_008336910.11e-158(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22823376
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19860.13e-59bHLH family protein
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]