PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G039131.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | bZIP | ||||||||
Protein Properties | Length: 362aa MW: 37705.2 Da PI: 6.0723 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 76.7 | 2.9e-24 | 268 | 330 | 1 | 63 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 e+elkr++rkq+NRe+ArrsR+RK+ae+eeL+ +v++L +eN++L++el++l++e++kl+se+ HL.SW.v1.0.G039131.1 268 ERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLGNENRSLREELQKLSEECQKLTSEN 330 89***********************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF07777 | 2.3E-30 | 1 | 93 | IPR012900 | G-box binding protein, multifunctional mosaic region |
Pfam | PF16596 | 4.0E-7 | 115 | 229 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 1.2E-20 | 263 | 327 | No hit | No description |
Pfam | PF00170 | 1.6E-21 | 268 | 330 | IPR004827 | Basic-leucine zipper domain |
SMART | SM00338 | 3.1E-22 | 268 | 332 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 13.196 | 270 | 333 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 5.06E-12 | 271 | 327 | No hit | No description |
CDD | cd14702 | 1.71E-23 | 273 | 324 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 275 | 290 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010310 | Biological Process | regulation of hydrogen peroxide metabolic process | ||||
GO:0010629 | Biological Process | negative regulation of gene expression | ||||
GO:0090342 | Biological Process | regulation of cell aging | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 362 aa Download sequence Send to blast |
MGTGEENAAS KTSKPASSSQ EIPTAPSYPD WSSSMAYYTA GATPPPFFAS TVASPTPHPY 60 LWGSQHALMP PYGTPVPYPA IYPPGGVYAH PNMAATPVSM QANPDLEGKS TDGKDRASAK 120 KSKINSGSTG LAGAKAGESG KATSGSGNDG ASQSAESGSE GSSDASDENN QQELSGSKKG 180 SFDQMLADGA NALNNSAGSI LQASVSGKPV GSMPATNLNI GMDLWNAPSG GSGATKLRPN 240 PSGASSSAAS ASMIGREGVM PDQWVQDERE LKRQKRKQSN RESARRSRLR KQAECEELQA 300 RVETLGNENR SLREELQKLS EECQKLTSEN GSIKDELTRL CGPEVVANLE HHQARSGESN 360 S* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 284 | 290 | RRSRLRK |
2 | 284 | 291 | RRSRLRKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter (PubMed:1373374). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional activator in light-regulated expression of LHCB2.4. Probably binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:1373374, ECO:0000269|PubMed:22718771}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00039 | PBM | Transfer from AT4G36730 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010099832.1 | 0.0 | G-box-binding factor 1 isoform X1 | ||||
Refseq | XP_024023591.1 | 0.0 | G-box-binding factor 1 isoform X1 | ||||
Swissprot | P42774 | 1e-112 | GBF1_ARATH; G-box-binding factor 1 | ||||
TrEMBL | A0A2P5AIE3 | 0.0 | A0A2P5AIE3_PARAD; Basic-leucine zipper transcription factor | ||||
STRING | XP_010099832.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5933 | 34 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36730.1 | 5e-98 | G-box binding factor 1 |