PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G039006.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family bHLH
Protein Properties Length: 399aa    MW: 43839.1 Da    PI: 5.9316
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G039006.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.64.5e-13154205155
                           CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           +r++h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i   A++++k+L+
  HL.SW.v1.0.G039006.1 154 QRMTHIAVERNRRKQMNEYLAVLRSLMPPS---YVQRGDQASIIGGAINFVKELE 205
                           79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000835.56E-13152209No hitNo description
Gene3DG3DSA:4.10.280.103.9E-13153209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.4E-16153215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.459153204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-10154205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-10159210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MALETVVYNS QDTFSYGFKD VYSSMVGPNN TNLGYEFFLE EEEEHKSLVG IFDNHIMDQT  60
IHANLDYYYS PPPSALQSLT EQLGSSNSSP EVSCPPPQPP SAPLPLDQSF LHGSSLSLPG  120
QVTDPIAEPP ATEKGRRKRS RTRASKNKEE LENQRMTHIA VERNRRKQMN EYLAVLRSLM  180
PPSYVQRGDQ ASIIGGAINF VKELEQLLQS MEGHKVRTKV EDDHKEEIRN GGKLSSNPSQ  240
SSSSLPLPSS SSPSPPSSSS SSSSTSPSHF SSPFADFFSF PQYSTRANQY YLSNNSSGVA  300
SENGQMAAAA DIEVTMIDCH ANLKILSMKK PRQLLKMVAG LGALRLSVLH LNVTTVDQMV  360
LYSFSVKVEE GCHLNTMDEI AASVNQMLHR IEEPGLMS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1154165RMTHIAVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010098698.11e-121transcription factor bHLH96
SwissprotQ9C7T44e-80BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A2P5BDJ01e-164A0A2P5BDJ0_PARAD; Basic helix-loop-helix transcription factor
STRINGXP_010098698.11e-120(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71834135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.16e-37bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]