PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G038915.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | C2H2 | ||||||||
Protein Properties | Length: 450aa MW: 50554.8 Da PI: 8.3866 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 22.1 | 3.9e-07 | 256 | 278 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ Cgk F+r nL+ H+r H HL.SW.v1.0.G038915.1 256 HYCQVCGKGFKRDANLRMHMRAH 278 68*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 5.98E-6 | 254 | 281 | No hit | No description |
SMART | SM00355 | 0.0034 | 256 | 278 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 1.1E-6 | 256 | 282 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 12.653 | 256 | 283 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 258 | 278 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 75 | 325 | 358 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 30 | 363 | 385 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 450 aa Download sequence Send to blast |
MYSNNDDNGN IPSSSSSLPP PHDHHYSTTT TSSLSSILYT LSILKHKVHQ LQSLAAILLS 60 PPPAADDGDD QPEAAGSMAI AGMNMYNAIQ DIIAASSSMM VTFQQMGILS TSASTADHNN 120 INNCIQDQWQ QRLDKVINNP QPNFYSSSET VWFGTSGQDH HHHHEIYNNT SSSSIDNKDV 180 INNTTSNTSS QDHRIMTLQS RDQRVVVLDH HQNMTTATTP LVLKSETKRS KNENDDNNHF 240 DIVELEAADL LAKYTHYCQV CGKGFKRDAN LRMHMRAHGD EYKTSAALSN PIKNKINNNI 300 MISSGCSDWI NHSNNGMMSL LPKKYSCPQE GCRWNKKHAR FQPLKSMICV KNHYKRSHCP 360 KMYVCKRCSR KQFSVLSDLR THEKHCGDLK WQCSCGTTFS RKDKLMGHVA LFVGHTPLTI 420 VSSSTSRSRH QITTQLPHDH NMIKMMDQQ* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00522 | DAP | Transfer from AT5G22890 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004294539.1 | 1e-126 | PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1 | ||||
TrEMBL | A0A2P5C2Z4 | 1e-159 | A0A2P5C2Z4_PARAD; TFIIH C1-like domain containing protein | ||||
STRING | XP_004294539.1 | 1e-126 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8099 | 30 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22890.1 | 3e-89 | C2H2 family protein |