PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G038915.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family C2H2
Protein Properties Length: 450aa    MW: 50554.8 Da    PI: 8.3866
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G038915.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.13.9e-07256278123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           + C+ Cgk F+r  nL+ H+r H
  HL.SW.v1.0.G038915.1 256 HYCQVCGKGFKRDANLRMHMRAH 278
                           68*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.98E-6254281No hitNo description
SMARTSM003550.0034256278IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.1E-6256282IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.653256283IPR007087Zinc finger, C2H2
PROSITE patternPS000280258278IPR007087Zinc finger, C2H2
SMARTSM0035575325358IPR015880Zinc finger, C2H2-like
SMARTSM0035530363385IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MYSNNDDNGN IPSSSSSLPP PHDHHYSTTT TSSLSSILYT LSILKHKVHQ LQSLAAILLS  60
PPPAADDGDD QPEAAGSMAI AGMNMYNAIQ DIIAASSSMM VTFQQMGILS TSASTADHNN  120
INNCIQDQWQ QRLDKVINNP QPNFYSSSET VWFGTSGQDH HHHHEIYNNT SSSSIDNKDV  180
INNTTSNTSS QDHRIMTLQS RDQRVVVLDH HQNMTTATTP LVLKSETKRS KNENDDNNHF  240
DIVELEAADL LAKYTHYCQV CGKGFKRDAN LRMHMRAHGD EYKTSAALSN PIKNKINNNI  300
MISSGCSDWI NHSNNGMMSL LPKKYSCPQE GCRWNKKHAR FQPLKSMICV KNHYKRSHCP  360
KMYVCKRCSR KQFSVLSDLR THEKHCGDLK WQCSCGTTFS RKDKLMGHVA LFVGHTPLTI  420
VSSSTSRSRH QITTQLPHDH NMIKMMDQQ*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00522DAPTransfer from AT5G22890Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004294539.11e-126PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1
TrEMBLA0A2P5C2Z41e-159A0A2P5C2Z4_PARAD; TFIIH C1-like domain containing protein
STRINGXP_004294539.11e-126(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80993045
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.13e-89C2H2 family protein