PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G038818.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family MIKC_MADS
Protein Properties Length: 242aa    MW: 27898.6 Da    PI: 6.2428
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G038818.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.57.1e-28959151
                          S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                          +rienk+ rqvtf+kRr+g+lKK +ELSvLCda++ +iifs++gklye++s
  HL.SW.v1.0.G038818.1  9 SRIENKTTRQVTFAKRRAGLLKKTHELSVLCDAQIGLIIFSTNGKLYEFCS 59
                          59***********************************************96 PP
2K-box62.41.8e-2172169298
                 K-box   2 qkssgks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqe 89 
                           q ++g++ +e++++e+l+ e++++k+e++nLq  + ++ G+dL+sL+l eL++Le+ Le+s  k+R++K e+l +q+e+lq+ke+ l++
  HL.SW.v1.0.G038818.1  72 QLATGTRiVEQNDTEQLHGEMRRIKSETHNLQLILQRYTGDDLTSLTLGELNELENVLEHSSHKVRTRKFEILQQQMENLQRKEQLLEQ 160
                           66677778999*********************99******************************************************* PP

                 K-box  90 enkaLrkkl 98 
                           +n+++ + +
  HL.SW.v1.0.G038818.1 161 DNEQMFHLI 169
                           **9986655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.1E-38160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006630.614161IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.75E-30279IPR002100Transcription factor, MADS-box
CDDcd002653.90E-40276No hitNo description
PRINTSPR004043.4E-28323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003195.2E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004043.4E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004043.4E-283859IPR002100Transcription factor, MADS-box
PfamPF014862.5E-1881165IPR002487Transcription factor, K-box
PROSITE profilePS5129714.15485175IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008360Biological Processregulation of cell shape
GO:0019252Biological Processstarch biosynthetic process
GO:0043068Biological Processpositive regulation of programmed cell death
GO:0048316Biological Processseed development
GO:0048481Biological Processplant ovule development
GO:0080155Biological Processregulation of double fertilization forming a zygote and endosperm
GO:2000029Biological Processregulation of proanthocyanidin biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MGRGKINISR IENKTTRQVT FAKRRAGLLK KTHELSVLCD AQIGLIIFST NGKLYEFCSD  60
PLSMENIIKK YQLATGTRIV EQNDTEQLHG EMRRIKSETH NLQLILQRYT GDDLTSLTLG  120
ELNELENVLE HSSHKVRTRK FEILQQQMEN LQRKEQLLEQ DNEQMFHLIK EHQAAAASYE  180
QQQHVTKIEE VERMGMNNVS VLDQFPFGGE EQPSSVLQLA TLNPPPPPNF YPYQRLDDLE  240
H*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A4e-18171169MEF2 CHIMERA
6byy_B4e-18171169MEF2 CHIMERA
6byy_C4e-18171169MEF2 CHIMERA
6byy_D4e-18171169MEF2 CHIMERA
6bz1_A3e-18171169MEF2 CHIMERA
6bz1_B3e-18171169MEF2 CHIMERA
6bz1_C3e-18171169MEF2 CHIMERA
6bz1_D3e-18171169MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024030137.11e-100MADS-box protein defh21
SwissprotQ9ATE56e-69FBP24_PETHY; MADS-box protein FBP24
TrEMBLA0A2P5BJY51e-117A0A2P5BJY5_PARAD; MADS-box transcription factor
STRINGXP_009353975.12e-92(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49352952
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23260.21e-55MIKC_MADS family protein
Publications ? help Back to Top
  1. Tonaco IA,Borst JW,de Vries SC,Angenent GC,Immink RG
    In vivo imaging of MADS-box transcription factor interactions.
    J. Exp. Bot., 2006. 57(1): p. 33-42
    [PMID:16291798]