PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G038361.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family MYB
Protein Properties Length: 532aa    MW: 59426.1 Da    PI: 6.5643
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G038361.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.91e-17213259148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                           +g WT eEd +l+++vkq+G + W+ Ia++m  gR +kqc++rw+++l
  HL.SW.v1.0.G038361.1 213 KGQWTDEEDRKLIRLVKQYGVRKWAQIAEKMI-GRAGKQCRERWHNHL 259
                           799*****************************.*************97 PP
2Myb_DNA-binding52.31.3e-16266307245
                           SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
       Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                           + W++eE+++lv+a+++ G++ W+ Ia+++  gRt++ +k++w+
  HL.SW.v1.0.G038361.1 266 DGWSEEEEKILVEAHAEVGNR-WAEIAKRIS-GRTENAIKNHWN 307
                           56*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129428.325208263IPR017930Myb domain
SuperFamilySSF466891.22E-29211306IPR009057Homeodomain-like
SMARTSM007174.3E-17212261IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.3E-27214266IPR009057Homeodomain-like
CDDcd001671.12E-15216259No hitNo description
PfamPF139213.2E-20216274No hitNo description
PROSITE profilePS5129418.834264314IPR017930Myb domain
SMARTSM007171.1E-15264312IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-19267312IPR009057Homeodomain-like
CDDcd001672.36E-12268310No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 532 aa     Download sequence    Send to blast
MDNKEEGTGA GAGAGAGFFS GDFTSYNYRS YKPYNTNNSI HHQSNFSCKP ARPPLTAIDS  60
FLSGQSHHLT NNTSSDHQLQ LAHDHDHQSN VVSSSENGLW DFSSSSTTVV DHNNNTNHYY  120
GAITSGVHFS WPMSSLTGAD HHQDHQASFF EGLFVDDDDH HHGMVEAVMN RTQDRIMNID  180
TCSNEEVAEM MINSCKEMGK RALKKASSAA LIKGQWTDEE DRKLIRLVKQ YGVRKWAQIA  240
EKMIGRAGKQ CRERWHNHLR PDIKKDGWSE EEEKILVEAH AEVGNRWAEI AKRISGRTEN  300
AIKNHWNATK RRQNSRRKST KQSESQNRNK PQSSVLQNYI RSKSLMLMLN NNNGNNVPTV  360
VVDLLSESTS TNTTTTDSGA ESPLLVSDQA YDDEVLFMQN LFSNNPTTTT TITDHSNKSH  420
GGDDHHQQKL NMNDHGNIIP NNTTTTTPSG RSTHLYSDLY LSYLLNGAPA SSSSSSIFNV  480
NDDDCYGQMS KMKMVDDADH HRGEHSDSNG IVGKREMDLI EMVTSSLFSK D*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C4e-432113132104C-Myb DNA-Binding Domain
1msf_C4e-432113132104C-Myb DNA-Binding Domain
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00567DAPTransfer from AT5G58850Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010104665.11e-134transcription factor MYB64
TrEMBLA0A2P5ASJ90.0A0A2P5ASJ9_TREOI; Octamer-binding transcription factor
STRINGXP_010104665.11e-134(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41293158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58850.16e-64myb domain protein 119