PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G038292.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | HSF | ||||||||
Protein Properties | Length: 442aa MW: 49517 Da PI: 4.5488 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 111.2 | 7.2e-35 | 139 | 230 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgk 90 Fl+k++++++d+ +++++sw + +sf+v+d++ef+k++LpkyFkh nf+SF+RQLn+YgFkk++ ++ weF++k F+ gk HL.SW.v1.0.G038292.1 139 FLNKTFQMVDDPGTESIVSWGQARDSFIVWDSHEFSKNLLPKYFKHCNFSSFIRQLNTYGFKKIDPDR---------WEFANKGFQGGK 218 9****************************************************************999.........************ PP XXXXXXXXXXXX CS HSF_DNA-bind 91 kellekikrkks 102 k+ll++ikr+++ HL.SW.v1.0.G038292.1 219 KHLLKNIKRRSK 230 **********87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 4.6E-37 | 135 | 228 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 1.63E-32 | 135 | 228 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 1.3E-56 | 135 | 228 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 2.3E-30 | 139 | 228 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 4.6E-17 | 139 | 162 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 4.6E-17 | 177 | 189 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 178 | 202 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 4.6E-17 | 190 | 202 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 442 aa Download sequence Send to blast |
MVAVADGGCA CYSPLSNTQL HKIWEAELND DVPLDENGHP LEPVLLASVK EEEEHVTSSS 60 SPTSDHPQLI PSPPSSPDGF VDDENKPSQL AKIKEEVIHN DVYENEQGDN IVNGGCSSTS 120 PLDFPVPMEG LHEAGPPPFL NKTFQMVDDP GTESIVSWGQ ARDSFIVWDS HEFSKNLLPK 180 YFKHCNFSSF IRQLNTYGFK KIDPDRWEFA NKGFQGGKKH LLKNIKRRSK YNRQLNEALT 240 LPMSDSAKSG LKSEIDTLKE DQSSLRTEIL NLRREQNNSQ CQITSAEERI RCAEFRQQQM 300 LLFLTKTILD SKFVHQLIHK RTQKKETIDA GQIAKRRRVL PCGEEQEQIT IQSIPAGKCP 360 ETENAPAPFV SSTEEESDGG SGSGSEVLSV YNVVSENLLD DTSFYDEELA VNDSTIYHEL 420 EDLIDEKHEE DWNAGFFGSI L* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 8e-23 | 108 | 228 | 4 | 129 | Heat shock factor protein 1 |
5d5v_B | 8e-23 | 108 | 228 | 4 | 129 | Heat shock factor protein 1 |
5d5v_D | 8e-23 | 108 | 228 | 4 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 221 | 227 | LKNIKRR |
2 | 334 | 338 | KRRRV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010090068.1 | 1e-140 | heat stress transcription factor A-2 | ||||
TrEMBL | A0A2P5BDD3 | 1e-155 | A0A2P5BDD3_PARAD; Heat shock transcription factor | ||||
STRING | XP_010090068.1 | 1e-139 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10676 | 29 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26150.1 | 6e-76 | heat shock transcription factor A2 |