PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G038215.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | bHLH | ||||||||
Protein Properties | Length: 159aa MW: 18154 Da PI: 6.2701 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 12.7 | 0.00024 | 8 | 26 | 37 | 55 |
-STCHHHHHHHHHHHHHHH CS HLH 37 KlsKaeiLekAveYIksLq 55 ++Ka++L A++Y+k+Lq HL.SW.v1.0.G038215.1 8 SMDKASVLGDAIKYMKQLQ 26 579***************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.62E-6 | 5 | 42 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 9.1E-7 | 8 | 40 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 159 aa Download sequence Send to blast |
MESNFSSSMD KASVLGDAIK YMKQLQERVK TLEEEMRKRN MESVVFVKKF QLFADKDNNS 60 SYSSDENCSS FDEPLPEIEA RVCDKNVLIR IHCEKKKGVM EKTIAEIEKH HLTIINSSCM 120 TFGSSSVDLT IIAQMNMEFS ITMKDLVKNL RLAFSLFM* |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010107640.2 | 2e-80 | transcription factor bHLH18 | ||||
Swissprot | Q9T072 | 7e-42 | BH025_ARATH; Transcription factor bHLH25 | ||||
TrEMBL | A0A2P5ECZ5 | 5e-83 | A0A2P5ECZ5_TREOI; Basic helix-loop-helix transcription factor | ||||
STRING | XP_010107640.1 | 5e-80 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF455 | 34 | 164 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37850.1 | 2e-37 | bHLH family protein |