PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G038215.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family bHLH
Protein Properties Length: 159aa    MW: 18154 Da    PI: 6.2701
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G038215.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.70.000248263755
                          -STCHHHHHHHHHHHHHHH CS
                   HLH 37 KlsKaeiLekAveYIksLq 55
                           ++Ka++L  A++Y+k+Lq
  HL.SW.v1.0.G038215.1  8 SMDKASVLGDAIKYMKQLQ 26
                          579***************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.62E-6542IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.1E-7840IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MESNFSSSMD KASVLGDAIK YMKQLQERVK TLEEEMRKRN MESVVFVKKF QLFADKDNNS  60
SYSSDENCSS FDEPLPEIEA RVCDKNVLIR IHCEKKKGVM EKTIAEIEKH HLTIINSSCM  120
TFGSSSVDLT IIAQMNMEFS ITMKDLVKNL RLAFSLFM*
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010107640.22e-80transcription factor bHLH18
SwissprotQ9T0727e-42BH025_ARATH; Transcription factor bHLH25
TrEMBLA0A2P5ECZ55e-83A0A2P5ECZ5_TREOI; Basic helix-loop-helix transcription factor
STRINGXP_010107640.15e-80(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45534164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.12e-37bHLH family protein