PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G038208.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family GRAS
Protein Properties Length: 338aa    MW: 37659.4 Da    PI: 6.5815
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G038208.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS44.52.5e-1455124271
                  GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetse 71 
                           ++lLl+cA a++ +d +laq++++ l++ as+ gdp+qRl++ f++AL +r +r +++  ++ ++s+t+ 
  HL.SW.v1.0.G038208.1  55 EKLLLHCASALERNDVTLAQQVMWVLNNVASSVGDPNQRLTSWFLRALISRASRICPTPTNSTTTSTTEM 124
                           689***************************************************8887777666666553 PP
2GRAS127.21.8e-39171324222373
                  GRAS 222 s..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrer 308
                           +   rd++L+++k+l+P++vvvv++++d+n++s+  r++ +++y +  fd+le+ lp++s +ri +E   +g +i+n++  eg++r+er
  HL.SW.v1.0.G038208.1 171 NysLRDTFLNAIKGLNPRIVVVVDEDSDLNASSLTSRITTCFNYLWIPFDALETFLPKDSCQRIEYESD-IGHKIENIIGFEGFQRIER 258
                           23479****************************************************************.******************* PP

                  GRAS 309 hetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373
                            e+ ++  +r+++aGF ++p+se++ k++k+ll +++ ++g++ eee++ lvl+Wk+++ v+ +aW
  HL.SW.v1.0.G038208.1 259 LESGATLYRRMRNAGFFSIPFSEDTIKEVKALLDEHAsGWGMKKEEEDHMLVLTWKGHNSVFSTAW 324
                           *************************************9**************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098512.0041304IPR005202Transcription factor GRAS
PfamPF035148.6E-1255124IPR005202Transcription factor GRAS
PfamPF035146.3E-37171324IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MKTEVRGSAT TTSISLQNPN NYSNNTNNLF INTPQGSLAG ALRGCLGSLD GGCIEKLLLH  60
CASALERNDV TLAQQVMWVL NNVASSVGDP NQRLTSWFLR ALISRASRIC PTPTNSTTTS  120
TTEMSLSRSS SPSSSNGVVQ RRLMSNWLRY LPDIGPDHHH HHHKDIGNNY NYSLRDTFLN  180
AIKGLNPRIV VVVDEDSDLN ASSLTSRITT CFNYLWIPFD ALETFLPKDS CQRIEYESDI  240
GHKIENIIGF EGFQRIERLE SGATLYRRMR NAGFFSIPFS EDTIKEVKAL LDEHASGWGM  300
KKEEEDHMLV LTWKGHNSVF STAWVPMITN LAEDSMG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_B3e-17173326259420Protein SHORT-ROOT
5b3h_E3e-17173326259420Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015882638.13e-97scarecrow-like protein 32
SwissprotQ9SN227e-49SCL32_ARATH; Scarecrow-like protein 32
TrEMBLA0A396JBF41e-136A0A396JBF4_MEDTR; Putative transcription factor GRAS family
STRINGXP_010109563.13e-96(Morus notabilis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.13e-50GRAS family protein