PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G037932.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family bHLH
Protein Properties Length: 266aa    MW: 28586.9 Da    PI: 5.9732
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G037932.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.45.2e-13201246655
                           HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           +++Er RR ri +++ +L+el+P+     +k  + a++Le+AveY+k Lq
  HL.SW.v1.0.G037932.1 201 SIAERVRRTRISDRIRKLQELVPNM----DKQTNTADMLEEAVEYVKCLQ 246
                           689*********************7....688****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.583195245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-16198261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.13E-11199250No hitNo description
Gene3DG3DSA:4.10.280.107.5E-16200258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-12201251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.2E-10201246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042335Biological Processcuticle development
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MQPTSGHSSS SVGGGGGGGG VSRGGLTRFR SAPATWLEAL LEDEEEDQLL KPTQCLTQLL  60
TEHSSPPATA TGSVPFGSSE DPCSFADEAS GFLRQNSSPA DFLGSSGHVS DGFFSNFAMP  120
ASFDMSSSTN VNVVSPTGSG KRAIEVETAR NFSGSMSSSP IKLEQGGHVS GLLDMEMEKF  180
LEDSVPLRVR AKRGCATHPR SIAERVRRTR ISDRIRKLQE LVPNMDKQTN TADMLEEAVE  240
YVKCLQKQIQ ELSEHQLRCK CKNKE*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00181DAPTransfer from AT1G35460Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024021064.11e-99transcription factor bHLH81
RefseqXP_024021065.11e-99transcription factor bHLH81
RefseqXP_024021066.11e-99transcription factor bHLH81
SwissprotQ9C8P87e-86BH080_ARATH; Transcription factor bHLH80
TrEMBLA0A2P5FQT71e-112A0A2P5FQT7_TREOI; Basic helix-loop-helix transcription factor
STRINGXP_010095898.13e-90(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91323043
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35460.11e-70bHLH family protein