PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G037913.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

HSF

Protein Properties

Length: 486aa MW: 54137 Da PI: 5.5398

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G037913.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	110.5	1.2e-34	17	107	2	101
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgk 90 Fl k+y++++d++++e++ ws+++nsfvv+++ ef++ +Lp+yFkh+nf+SF+RQLn+YgF+k++ e+ weF+++ F k++ HL.SW.v1.0.G037913.1 17 FLLKTYDMVDDSATDEIVAWSASKNSFVVWNPPEFSRLLLPTYFKHNNFSSFIRQLNTYGFRKIDPEK---------WEFQNEDFVKDQ 96 9******************999*************************************999.........******** PP XXXXXXXXXXX CS HSF_DNA-bind 91 kellekikrkk 101 k+ll++i+r+k HL.SW.v1.0.G037913.1 97 KHLLKNIHRRK 107 *******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46785	6.94E-35	12	106	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	2.6E-37	13	106	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	1.6E-59	13	106	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.4E-18	17	40	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	1.8E-30	17	106	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.4E-18	55	67	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	56	80	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.4E-18	68	80	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 486 aa Download sequence Send to blast
MEGAQAAVYG GSGPAPFLLK TYDMVDDSAT DEIVAWSASK NSFVVWNPPE FSRLLLPTYF 60 KHNNFSSFIR QLNTYGFRKI DPEKWEFQNE DFVKDQKHLL KNIHRRKPIH SHSNPQGSLA 120 DSERAALEEE LEKLSREKSV LEENISHCKQ QLMEKPQLET ATQRVNGLEK RQDNLHSFLE 180 KAVKDPAFVD YLVQKIESMD FGAYNKKRRL PEVEYSQPVV ENGFVENHSN SRAEFGNIVH 240 QDFSNKLRLE LSPAVSDIHL VSNSTQSSNE DGEISNRKIS EPELRGARVR AEGLFLAPEP 300 LELSDTGTSF GFKMDSSLSR KQPTNGSPGL RSLQTNLTSS EEGDGQISCL LNLSLASSPF 360 EVNNHPYSAG MPQLGQGIRK PLELRFGANP RESETRFSSM KKTVADGGKN LPSSQEAATT 420 NQGSVAAPGK VNDVFWEQFL TERPGCSDNE EASSNYRASA YDDLNDGRLG NGLSRNSKNV 480 EQLTL*

Sequence ? help Back to Top

Protein Sequence Length: 486 aa Download sequence Send to blast

MEGAQAAVYG GSGPAPFLLK TYDMVDDSAT DEIVAWSASK NSFVVWNPPE FSRLLLPTYF  60
KHNNFSSFIR QLNTYGFRKI DPEKWEFQNE DFVKDQKHLL KNIHRRKPIH SHSNPQGSLA  120
DSERAALEEE LEKLSREKSV LEENISHCKQ QLMEKPQLET ATQRVNGLEK RQDNLHSFLE  180
KAVKDPAFVD YLVQKIESMD FGAYNKKRRL PEVEYSQPVV ENGFVENHSN SRAEFGNIVH  240
QDFSNKLRLE LSPAVSDIHL VSNSTQSSNE DGEISNRKIS EPELRGARVR AEGLFLAPEP  300
LELSDTGTSF GFKMDSSLSR KQPTNGSPGL RSLQTNLTSS EEGDGQISCL LNLSLASSPF  360
EVNNHPYSAG MPQLGQGIRK PLELRFGANP RESETRFSSM KKTVADGGKN LPSSQEAATT  420
NQGSVAAPGK VNDVFWEQFL TERPGCSDNE EASSNYRASA YDDLNDGRLG NGLSRNSKNV  480
EQLTL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	3e-22	10	106	19	129	Heat shock factor protein 1
5d5v_B	3e-22	10	106	19	129	Heat shock factor protein 1
5d5v_D	3e-22	10	106	19	129	Heat shock factor protein 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010097956.1	0.0	heat stress transcription factor A-5
Swissprot	Q94BZ5	1e-158	HSFA5_ARATH; Heat stress transcription factor A-5
TrEMBL	W9RUK3	0.0	W9RUK3_9ROSA; Heat stress transcription factor A-5
STRING	XP_010097956.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4961	32	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13980.1	1e-148	HSF family protein

Publications ? help Back to Top
Reňák D,Gibalová A,Solcová K,Honys D A new link between stress response and nucleolar function during pollen development in Arabidopsis mediated by AtREN1 protein. Plant Cell Environ., 2014. 37(3): p. 670-83 [PMID:23961845]