PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G037585.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family ZF-HD
Protein Properties Length: 348aa    MW: 38417.5 Da    PI: 8.7695
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G037585.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer107.67.2e-3451108359
           ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 
                            v Y+eClkNhAa+lGgha+DGCgEfmp +++e +++++lkCaACgCHRnFHRr++ e
  HL.SW.v1.0.G037585.1  51 VVSYRECLKNHAANLGGHALDGCGEFMPCPTAEpSDPTSLKCAACGCHRNFHRRDQPE 108
                           689******************************9********************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047708.3E-2852106IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257746.0E-2252105IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.9E-2954105IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.41754105IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.602.1E-28212284IPR009057Homeodomain-like
SuperFamilySSF466894.21E-17213283IPR009057Homeodomain-like
TIGRFAMsTIGR015652.1E-25222278IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MDLSPTPTKT TQDTDTETPP PPQATRSLSF SNGPLKLHHR HLNHHAPPPM VVSYRECLKN  60
HAANLGGHAL DGCGEFMPCP TAEPSDPTSL KCAACGCHRN FHRRDQPEEP TSKHFLHSFH  120
NGRQFQLHPL RPSSQPRQGR SSSPSLSPSP SSSTGPTPSP QSPPPVSHLP PNSYFASPPQ  180
MLLALSTGFS TGPPSDNHHP THKSFNPTAG VKSSEANYSN AKKRFRTKFN QEQKEKMCLF  240
AEKVGWKMHR SEERLVEEFC KEIGVRRGVL KVWMHNNKHT LGKKDRGLSQ SHNLVDEASN  300
GDNTNNEGRV LSFDSNQDNE IVVDQNQNGE DRRANFNFFA NGSSSSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A4e-202232801875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the up-regulation of several stress-inducible genes. Acts as a transcriptional activator by interacting with MED25 and NAC proteins. Involved in increased drought tolerance. {ECO:0000269|PubMed:16428600, ECO:0000269|PubMed:17233795}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by abscisic acid and by drought and salt stress. Not induced by cold. {ECO:0000269|PubMed:17233795}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015895093.11e-102zinc-finger homeodomain protein 11-like
SwissprotQ9SEZ11e-58ZHD11_ARATH; Zinc-finger homeodomain protein 11
TrEMBLA0A2P5D1E81e-155A0A2P5D1E8_TREOI; Octamer-binding transcription factor
STRINGXP_008221618.11e-93(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19793188
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15210.12e-29homeobox protein 30
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]