PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G037541.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family B3
Protein Properties Length: 474aa    MW: 54112.4 Da    PI: 9.8557
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G037541.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.51.3e-143694571196
                           HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEE CS
                    B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkv 96 
                           ++++++ +p +f+++++  +  +++l+  +e+ ++W v++ y  k+++    l++GW +F ++++Lk gD++vF++++  ++  ++v +
  HL.SW.v1.0.G037541.1 369 SSRCNMDVPAEFVRKYMRFSSDKIELQPGNEKKNKWPVRCYYADKDRSlvKRLGSGWGSFSSSQKLKKGDICVFEMIRCvNGVVFRVWI 457
                           57899***********55555667899999**********99777777567799*********************98754555555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.4E-821117IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.86E-622117IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508636.92223119IPR003340B3 DNA binding domain
SMARTSM010190.05523119IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.7E-18354459IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.83E-16356460IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.096359461IPR003340B3 DNA binding domain
CDDcd100174.31E-7361459No hitNo description
SMARTSM010192.2E-8363461IPR003340B3 DNA binding domain
PfamPF023622.9E-12369458IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
MAPPPACRNL TLFSASPAPL RPLFAVVVKE AVLVEHKLKI PTKSGMIFGE ELLELCALNV  60
PNSNRAWQVR IEKNDKSIYI CLEDGVNDFI NHYSIHSKSI LQFTYQGNSS FHVRICDALG  120
AEIDYPLDDD DDDHHHNKHT PIVVIDSGSS QIKPRKRGRR SGIVIPSKDH SNGREFYWHQ  180
TRNVSRIKKE KDDDDDVHLN TATAIGAEID YPLDDVDDHN KHTPIVVIDS GSSQIKPRKR  240
GRRSRMILTK DHGNGREFYW HQTRNVSRIK KEKDDDGDDD DDVHLNTAIA SPKPRKRGRR  300
IAASKDNKTS YGSHVKKEEK EEEHEMIIPR SFSYINGRRP VMSEASKKAV RAAQESKPRN  360
PSFLLLLKSS RCNMDVPAEF VRKYMRFSSD KIELQPGNEK KNKWPVRCYY ADKDRSLVKR  420
LGSGWGSFSS SQKLKKGDIC VFEMIRCVNG VVFRVWIYRS ANFAVKDTFN KAK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A2e-1433845924141B3 domain-containing transcription factor VRN1
4i1k_B2e-1433845924141B3 domain-containing transcription factor VRN1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.12e-16related to vernalization1 1