PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | HL.SW.v1.0.G037449.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 245aa MW: 27868.8 Da PI: 10.0326 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.9 | 7.9e-05 | 86 | 108 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C+ C+++++++ +L Hi+ H HL.SW.v1.0.G037449.1 86 SCSVCSRVYPTSRLLSIHISEaH 108 6******************9888 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 0.51 | 58 | 83 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 60 | 83 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 5 | 85 | 108 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 87 | 108 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 1.1 | 123 | 148 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 125 | 148 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 245 aa Download sequence Send to blast |
MAMEVEQSPL GFPYWKPLLR RFDPDSPFFA SGNIERELLA KQVFLSQFQY FRTLKIRVSC 60 PIVGCGAHLT SLEDFEDHYN ARHTASCSVC SRVYPTSRLL SIHISEAHDS FFQAKVARGY 120 AMYECLVEGC TLKFKNYKSR HQHLVDKHKF PTSFEFFKKA HASKKLRQKQ QRKQAIHKKA 180 DTSNMEVESE MIDGLVSAVS KLSTSDSSPS SISFGRRNTR GLTFVPRAVQ RDKRPDSSSA 240 ETKT* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015893832.1 | 1e-132 | zinc finger protein 511 | ||||
TrEMBL | A0A2P5CJX1 | 1e-141 | A0A2P5CJX1_PARAD; TFIIH C1-like domain containing protein | ||||
STRING | XP_006470078.1 | 1e-129 | (Citrus sinensis) | ||||
STRING | XP_006447049.1 | 1e-129 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9718 | 24 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G14140.1 | 1e-102 | zinc ion binding;nucleic acid binding;zinc ion binding |