PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G037417.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family C2H2
Protein Properties Length: 802aa    MW: 89322.5 Da    PI: 4.8017
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G037417.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.10.00014404427123
                           EEETTTTEEESSHHHHHHHHHH.T CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                           ++C++C+++F +k+ + +H+ + H
  HL.SW.v1.0.G037417.1 404 FECHKCSMTFDQKDAYLQHLLSfH 427
                           89******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS509829.346273346IPR001739Methyl-CpG DNA binding
Gene3DG3DSA:3.30.890.101.2E-4274328IPR001739Methyl-CpG DNA binding
SuperFamilySSF541715.89E-7279328IPR016177DNA-binding domain
PROSITE profilePS501578.787404432IPR007087Zinc finger, C2H2
SMARTSM003550.11404427IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280406427IPR007087Zinc finger, C2H2
SMARTSM003550.2451473IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.829451478IPR007087Zinc finger, C2H2
PROSITE patternPS000280453473IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 802 aa     Download sequence    Send to blast
MAAVATNRPQ TLPEPTLKLD CIPQIDISSL SQTELHALSL CSSSAFDLHC TDDIVVPKID  60
RATFNESAGS RRQTYSRPRR SQSSSSSSSV RTVASAATGH RRRVAGLLPT PKVSHILADD  120
PERYENRSII DHLKRFISQD PKFNFVEFSQ PSSQMEMGFN YEGGRGVAEL DGGRDQMSLT  180
SYGGERKRKR GRKPKLLKVQ LEMQNVEPES YRGLEMVNRN GVAVDFSALG NADDPYGEEF  240
RRRTVGLESE EALLGFLREL DGQWGSRRKK RKIVDASEFG DALPIGWKLL LGLKRKEGRA  300
WIYCRRYISP NGQQFISCKD VSSYLQSVGC RNTPHLLNGH KNENNQEYRQ ITENHAGLIF  360
KEGEQRQDLN SSSAAPTSTS YEQEKEVALF GMENLAEVQI HDLFECHKCS MTFDQKDAYL  420
QHLLSFHQRT TRRYRLGSSV GDGVIIKDGK YECQFCHKVF LERRRYNGHV GIHVRNYVRK  480
VEDVPGSTEQ QKIESPTTED LPAKISKMDA LIEIAQNSIL ETSARLGDGS KGGSAPDISL  540
AISSSEFPVF NPDHEMNTDS PHSEHDLDDC MTDQEHMDLQ DNEHVVTDGT TEKTDGACEI  600
VDEDSSVFIS DRVEKPAIEL EGVTECDRLT PVSSQSICNV ENAAKMDNDG TLGLEHLKPV  660
QVNASTNNAL EIDIEINMDG PTNNIAVESI QQCSEGTELH LEVSECSMSM LQPLPCFSSL  720
KETSDERQAS EMGFEELSLE EIEPLQYSFV GGQDSSLQEV PIDLEGAVEM EGAFGSSVHF  780
ESGEVMLNMT GTRRDQLTAC K*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1184193ERKRKRGRKP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015893711.10.0uncharacterized protein LOC107427828 isoform X2
TrEMBLA0A2P5C4J30.0A0A2P5C4J3_PARAD; TFIIH C1-like domain containing protein
STRINGEMJ008670.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58101719