PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G037204.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family GATA
Protein Properties Length: 279aa    MW: 30977.2 Da    PI: 9.3442
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G037204.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.95.6e-18213247135
                  GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                           Cs+C + kTp+WR gp g+ktLCnaCG++y++ +l
  HL.SW.v1.0.G037204.1 213 CSHCLSQKTPQWRAGPLGPKTLCNACGVRYKSGRL 247
                           *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004018.6E-16207261IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.121210243IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.33E-14211271No hitNo description
Gene3DG3DSA:3.30.50.109.4E-14211245IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.04E-13212259No hitNo description
PROSITE patternPS003440213238IPR000679Zinc finger, GATA-type
PfamPF003208.6E-16213247IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MDICRNVSLG GEYEKEEHNL SLSPPSSDHY SSSSGLDQLF SSQTVEEDLS LEWLSVFVED  60
CLTSSGNCLP LPPLPNTTSS STTTNITSTC TNVLQTPKPS KPLEFHKDQK KPTSLETFSV  120
PSKARSKRKR AVLTKRRDPL TIWSSQQMAK KTTTTTTSYY DYPPLLQQAY WLADSELIVP  180
KKEVGKEKVK ENGDLVKEQP LGLVAHGLVA RRCSHCLSQK TPQWRAGPLG PKTLCNACGV  240
RYKSGRLLPE YRPAKSPTFV SYLHSNSHKK VMEMRNGS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023929202.11e-93GATA transcription factor 5-like
TrEMBLA0A2N9E4E42e-95A0A2N9E4E4_FAGSY; Uncharacterized protein
STRINGPOPTR_0019s04860.14e-87(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84872444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.12e-36GATA transcription factor 12