PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G037148.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

Trihelix

Protein Properties

Length: 420aa MW: 46714.6 Da PI: 10.0553

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G037148.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	65.4	1.2e-20	111	201	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdq 84 +W+++e+ aLi+ +r+++ +lrrg+lk+++W+ev++++ + ++++qC++k+e+l+kry+ + +++++ s+ +s++++f++ HL.SW.v1.0.G037148.1 111 CWSHEETVALIDSYRDKWYSLRRGNLKATHWQEVADAVsarcPSASPAKTAVQCRHKMEKLRKRYRTELQRARSMpVSRFTSSWVHFKR 199 7******************************99999666566677899********************97799******** PP trihelix 85 le 86 ++ HL.SW.v1.0.G037148.1 200 MD 201 *8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	9.6E-22	110	203	No hit	No description
PROSITE profile	PS50090	6.051	112	172	IPR017877	Myb-like domain
SMART	SM00595	1.0E-11	119	208	IPR006578	MADF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 420 aa Download sequence Send to blast
MHMALTILRG GHPHEVIGGA LPTIVVEAVK IIGAKCRWSR RRLPLSQIQD PVMASPSSPP 60 ESPLPPGPPQ AIPLALPAPP PSSSSAQVQS APLAQVQPTP PSSSRRLPPP CWSHEETVAL 120 IDSYRDKWYS LRRGNLKATH WQEVADAVSA RCPSASPAKT AVQCRHKMEK LRKRYRTELQ 180 RARSMPVSRF TSSWVHFKRM DSMEKGPTAK PENSDSPGED DDHEEEEEDP DQQLYEELKY 240 GSNMKSMTKL YRNGVGGSGG GGSSSSGFRI RIPTGVSIAQ PGTKVYAKVD PKFGMIHPNS 300 INSGPNFGTK VVRECNLVRP GLGKRERERE KEKDPVTEMV SAIKALGDGF VRMEQMKMEM 360 AREIETMRME MEMKRTEMIL DSQQRIVEAF AKAVSEKKKK RLNHIKNGKD TFERMDLSI*

Sequence ? help Back to Top

Protein Sequence Length: 420 aa Download sequence Send to blast

MHMALTILRG GHPHEVIGGA LPTIVVEAVK IIGAKCRWSR RRLPLSQIQD PVMASPSSPP  60
ESPLPPGPPQ AIPLALPAPP PSSSSAQVQS APLAQVQPTP PSSSRRLPPP CWSHEETVAL  120
IDSYRDKWYS LRRGNLKATH WQEVADAVSA RCPSASPAKT AVQCRHKMEK LRKRYRTELQ  180
RARSMPVSRF TSSWVHFKRM DSMEKGPTAK PENSDSPGED DDHEEEEEDP DQQLYEELKY  240
GSNMKSMTKL YRNGVGGSGG GGSSSSGFRI RIPTGVSIAQ PGTKVYAKVD PKFGMIHPNS  300
INSGPNFGTK VVRECNLVRP GLGKRERERE KEKDPVTEMV SAIKALGDGF VRMEQMKMEM  360
AREIETMRME MEMKRTEMIL DSQQRIVEAF AKAVSEKKKK RLNHIKNGKD TFERMDLSI*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009375369.1	1e-155	PREDICTED: trihelix transcription factor ASIL2-like
TrEMBL	A0A2P5FPU0	0.0	A0A2P5FPU0_TREOI; MADF domain containing protein
STRING	XP_009375369.1	1e-154	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4638	28	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	5e-71	Trihelix family protein