PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | HL.SW.v1.0.G037085.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 484aa MW: 53866.2 Da PI: 8.7994 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 22 | 4.3e-07 | 276 | 298 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ Cgk F+r nL+ H+r H HL.SW.v1.0.G037085.1 276 HYCQVCGKGFKRDANLRMHMRAH 298 68*******************99 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 6.6E-6 | 274 | 301 | No hit | No description |
PROSITE profile | PS50157 | 12.653 | 276 | 303 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0034 | 276 | 298 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 1.3E-6 | 276 | 302 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 278 | 298 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 74 | 348 | 381 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 30 | 386 | 408 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 484 aa Download sequence Send to blast |
MYSNNDNNGN IIPSSSSSSL PPPHDHAQTD HHYSTTTTTT TSLSSILYTL SILKHKVQQL 60 QSLAAILLSP PPAADDDQPE AAGSMAIAAG VNMYNAIQDI IAASSSMMVT FQQMGILSTT 120 ASTTDHNNIS NTIQDQWQQR LNKVINNPQP NFYSSSETVW FGTSGQDHHH HHEIYNNTTT 180 TTTNTSSSID NKDVINNTTS NTSSQDHRIM TLQSRDQRVD HHQNMTSCTL FPSDNTTTPL 240 VLKSGTKRSK NENDDNNNHF DIVELEAADL LAKYTHYCQV CGKGFKRDAN LRMHMRAHGD 300 EYKTSAALSN PTKNKINNTI MISSSGGCSS DWINHSNGMM MSLLPKKYSC PQEGCRWNKK 360 HAKFQPLKSM ICVKNHYKRS HCPKMYVCKR CSRKQFSVLS DLRTHEKHCG DLKWQCSCGT 420 TFSRKDKLMG HVALFVGHTP LTIVSSSTSS GIINNKSFKS VPLDQGSRSR HQITTQLPHH 480 DHK* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2P5C2Z4 | 1e-156 | A0A2P5C2Z4_PARAD; TFIIH C1-like domain containing protein |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8099 | 30 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G22890.1 | 1e-88 | C2H2 family protein |