PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G036936.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family M-type_MADS
Protein Properties Length: 391aa    MW: 43973.4 Da    PI: 7.5123
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G036936.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF56.92.7e-181148340
                          --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS
                SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviif 40
                          i  ++ r +tf+kRr g++KKA+ELS+LCd++v++i+ 
  HL.SW.v1.0.G036936.1 11 IPKERARRITFTKRRSGLIKKAYELSTLCDVKVCLIVN 48
                          5567889*****************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006621.418147IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.22E-20160IPR002100Transcription factor, MADS-box
SMARTSM004325.7E-23160IPR002100Transcription factor, MADS-box
CDDcd002664.20E-22272No hitNo description
PRINTSPR004042.9E-14323IPR002100Transcription factor, MADS-box
PfamPF003194.0E-181153IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-142338IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-143859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MGRGKLPLKL IPKERARRIT FTKRRSGLIK KAYELSTLCD VKVCLIVNDY TNQPSEPVAT  60
WPKNPREVRA LINDYITAMT LKPASKRLLT MADFLNDRIK KVNAETEKVG HTQILTTTTT  120
AATTKCKSIA LGNGSYQEKL ILGESYIAEL SGNQLSEFAS DLDNKIEQVN ERMKQLIHIY  180
HYNHFGMQEP LNGGSTSSYN VQPGFVQYYS PHDPYQAMAA ATQMYHQHQH QHQHQLQFPY  240
YNDYKTQVPL QQLPWNHDLP SSSSSKALVP YNPSSQTVSF DNHYNNGSFT RLLTSNDYAA  300
DEYYSYSTNG TALLDGQGDH GQYDMKSAMF NNNSPLVLES GGALHQNDQN GMMSSHTPMA  360
LQNQPLLPLM PSSAASEWHY NQADPMMGYV *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2186223
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22590.22e-14AGAMOUS-like 87