PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G036935.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family M-type_MADS
Protein Properties Length: 376aa    MW: 42229.3 Da    PI: 6.8578
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G036935.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF55.28.8e-181548740
                          HHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS
                SRF-TF  7 snrqvtfskRrngilKKAeELSvLCdaevaviif 40
                          + r +tf+kRr g++KKA+ELS+LCd++v++i+ 
  HL.SW.v1.0.G036935.1 15 RARRITFAKRRSGLIKKAYELSTLCDVKVCLIVN 48
                          5799****************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554553.53E-19160IPR002100Transcription factor, MADS-box
SMARTSM004321.3E-20160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006620.184147IPR002100Transcription factor, MADS-box
CDDcd002666.35E-20272No hitNo description
PRINTSPR004045.7E-13323IPR002100Transcription factor, MADS-box
PfamPF003192.0E-171353IPR002100Transcription factor, MADS-box
PRINTSPR004045.7E-132338IPR002100Transcription factor, MADS-box
PRINTSPR004045.7E-133859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MGRGKLPLKL KPKERARRIT FAKRRSGLIK KAYELSTLCD VKVCLIVNDY TNQPSEPVAT  60
WPKNPREVRA LINDYITAMT LKPASKRLLT MADFLNDRIQ KVNAETEKVS HTQTMTTTTT  120
KSKSSYQEKL VLGESYIAEL SGTGTGNQLS EFVSDLDNKI EQVNERMKHL IHVYHYNHFG  180
MQEPLNGSSS GSSSSTSTYD VQPSFAQYYS PHDPHQAMAA ATQMYQQQQL QFPYYNDNKP  240
QPLLQQQQLP WIHDQPSSSS SKALVPFNPS SQTVSFDDHY NNGSFTWLLT SDDYAADQYY  300
SSSSTNGTTT ALLEGQGDMN IMFNNNIPLM LESGEALHQN DQNGMMLSNN PMVLPYVNQS  360
LCGNNILFNN NLFLS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2186223
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22590.26e-13AGAMOUS-like 87