PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G036856.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

HD-ZIP

Protein Properties

Length: 213aa MW: 24845.2 Da PI: 6.689

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G036856.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	62.9	4.7e-20	55	107	4	56
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++++++eq++ Le Fe+++++ e++ +LA++lgL+ rqV vWFqNrRa++k HL.SW.v1.0.G036856.1 55 KRKLSEEQVNLLEMNFESEHKLESERKDRLASELGLDPRQVAVWFQNRRARWK 107 4589************************************************9 PP
2	HD-ZIP_I/II	124.2	5.9e-40	54	145	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 +kr+ls+eqv+lLE++Fe+e+kLe+erK +la+eLgl+prqvavWFqnrRAR+ktk+lE++y++Lk+ +d+++++++rLe+ev +L+e+ HL.SW.v1.0.G036856.1 54 RKRKLSEEQVNLLEMNFESEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKTKKLEEEYSSLKKLHDSVVHDKCRLESEVLKLKEQ 142 8***************************************************************************************9 PP HD-ZIP_I/II 91 lke 93 +++ HL.SW.v1.0.G036856.1 143 MSD 145 975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	17.086	49	109	IPR001356	Homeobox domain
SMART	SM00389	1.0E-17	52	113	IPR001356	Homeobox domain
CDD	cd00086	5.11E-16	54	110	No hit	No description
SuperFamily	SSF46689	6.42E-18	55	117	IPR009057	Homeodomain-like
Pfam	PF00046	2.8E-17	55	107	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	4.9E-21	56	116	IPR009057	Homeodomain-like
PRINTS	PR00031	1.3E-5	80	89	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	84	107	IPR017970	Homeobox, conserved site
PRINTS	PR00031	1.3E-5	89	105	IPR000047	Helix-turn-helix motif

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009733	Biological Process	response to auxin
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 213 aa Download sequence Send to blast
MTSTMNNQVE DHMVLYTQLY PGVYPQMAPQ QGETKAKRRR KKNKSAKEES ALARKRKLSE 60 EQVNLLEMNF ESEHKLESER KDRLASELGL DPRQVAVWFQ NRRARWKTKK LEEEYSSLKK 120 LHDSVVHDKC RLESEVLKLK EQMSDAEKKI QRLTERVDCV SSNSPSSSLS MEAAMDPPFL 180 GEFGVVEEYD DVFYVPDNSY INHGMEWMNL YM*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	37	55	RRRKKNKSAKEESALARKR
2	39	56	RKKNKSAKEESALARKRK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00473	DAP	Transfer from AT4G36740	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269\|PubMed:16055682}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010099829.1	2e-97	homeobox-leucine zipper protein ATHB-40
Refseq	XP_021679570.1	3e-97	homeobox-leucine zipper protein ATHB-40-like
Swissprot	O23208	5e-76	ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40
TrEMBL	A0A2P5BC59	1e-112	A0A2P5BC59_PARAD; Octamer-binding transcription factor
STRING	XP_010099829.1	9e-97	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4789	32	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36740.1	2e-61	homeobox protein 40

Publications ? help Back to Top
González-Grandío E, et al. Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254 [PMID:28028241]