PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G036783.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family C2H2
Protein Properties Length: 328aa    MW: 37138 Da    PI: 7.5895
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G036783.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.91.7e-05132151120
                           EEETTTTEEESSHHHHHHHH CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                           ++C+ C+k+F+r  n++ H+
  HL.SW.v1.0.G036783.1 132 FSCSVCNKTFNRYNNMQMHM 151
                           89*****************9 PP
2zf-C2H211.70.00081217239123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           + C +C+k+F  + + ++H +++
  HL.SW.v1.0.G036783.1 217 FGCRKCSKPFAVRGDWRTHEKNC 239
                           56*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.93E-5128154No hitNo description
PfamPF128748.7E-5132151No hitNo description
Gene3DG3DSA:3.30.160.605.1E-6132151IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.071132154IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.429132159IPR007087Zinc finger, C2H2
PROSITE patternPS000280134154IPR007087Zinc finger, C2H2
SMARTSM00355220180212IPR015880Zinc finger, C2H2-like
SuperFamilySSF576674.68E-5201237No hitNo description
Gene3DG3DSA:3.30.160.602.3E-4203237IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM00355210217237IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010087Biological Processphloem or xylem histogenesis
GO:0010305Biological Processleaf vascular tissue pattern formation
GO:0010588Biological Processcotyledon vascular tissue pattern formation
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MHTTSISTTT PSFSYICSEA DDRLDHEDSI VLSLGPPGQH NNNISRHYKP IFHQHHSTSN  60
QPQSNIQISS CFKSSTDTTV TSTSEKAGVT VALHAGLSDS GLRHISIHNE TPTEAQYWIP  120
SPAQILVGPT QFSCSVCNKT FNRYNNMQMH MWGHGSQYRK GPESLKGTKP ASSMLRLPCY  180
CCAEGCKNNI EHPRARPLKD FRTLQTHYKR KHGAKPFGCR KCSKPFAVRG DWRTHEKNCG  240
RLWFCVCGSD FKHKRSLKDH VRAFGSGHAP HALELCEVEG EDGEHDNDND NDDDDDDDYD  300
YEERDNDSLG GSIYHEREGY RRRRRRL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1316325REGYRRRRRR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator (Probable). Involved in leaf vasculature patterning (PubMed:18643975). {ECO:0000269|PubMed:18643975, ECO:0000305|PubMed:20541552}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021299830.11e-131zinc finger protein WIP6
SwissprotQ9FX681e-114ZWIP6_ARATH; Zinc finger protein WIP6
TrEMBLA0A2P5ENL01e-158A0A2P5ENL0_TREOI; Yin/yang transcription factor
STRINGXP_010046596.11e-130(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13290.11e-112C2H2-like zinc finger protein