PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G036750.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family WRKY
Protein Properties Length: 553aa    MW: 60997.1 Da    PI: 5.7694
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G036750.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.32.8e-32100156259
                           --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                           +DgynWrKYGqK+vkgse+prsYY+Ct+++C+vkkkvers+ d++++ei+Y+++Hnh 
  HL.SW.v1.0.G036750.1 100 EDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCEVKKKVERSH-DGQITEIIYKSNHNHA 156
                           7****************************************.***************7 PP
2WRKY103.21.5e-32314371259
                           --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                           +Dgy+WrKYGqK+vkg+++prsYY+Cts gCpv+k+ver++ + +++++tYeg+Hnh+
  HL.SW.v1.0.G036750.1 314 EDGYRWRKYGQKVVKGNPNPRSYYKCTSVGCPVRKHVERASGNVQAIITTYEGKHNHQ 371
                           8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.4E-2890158IPR003657WRKY domain
PROSITE profilePS5081123.3394158IPR003657WRKY domain
SuperFamilySSF1182908.11E-2595158IPR003657WRKY domain
SMARTSM007746.9E-3699157IPR003657WRKY domain
PfamPF031067.8E-25100155IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.3E-34298373IPR003657WRKY domain
PROSITE profilePS5081135.795308373IPR003657WRKY domain
SuperFamilySSF1182901.28E-27308373IPR003657WRKY domain
SMARTSM007741.9E-37313372IPR003657WRKY domain
PfamPF031065.3E-25314371IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 553 aa     Download sequence    Send to blast
MEQHSNGFEL QVEFPEEATT KDSEDSSNGV KVSNNMTMRT TMVDDDAKCL NMKMSPPDVA  60
CDQTPDLSRK PVHGEYNTSI DISERNQFDY YSSVGVRTSE DGYNWRKYGQ KQVKGSEYPR  120
SYYKCTHPNC EVKKKVERSH DGQITEIIYK SNHNHAKPQP NRRPGLGSSA FSFDEVPEVS  180
GGSGISVKVE GGSAWTNNMA STSVSLDKKK INGTNEFAGT PNELSDPLSS VHGKSIELGE  240
ATPEVSTTIC GHDDENGATQ GSISVRDDED DDEPEAKRRK KLNCSSVETT ALSSRAVREP  300
KIVIQIETDG DILEDGYRWR KYGQKVVKGN PNPRSYYKCT SVGCPVRKHV ERASGNVQAI  360
ITTYEGKHNH QVPAARNSSS HINSTSPNPP IPPTTPNNSQ PPRNITIPKP EAQIHGLPPL  420
FDTKPEFCNT DYYLRPSFPG NFTNDFSYGA QSFYQMSLPL QNPLPYGLNP NLIATQHGSS  480
SVGSFMPDFP ASFPFSFPNI GFDYSTGKSV VAPVGENDTR FVQPKQEQND DEITYDANTS  540
SSSSYNPFVG RF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-3093374578Probable WRKY transcription factor 4
2lex_A2e-3093374578Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015875770.10.0WRKY transcription factor SUSIBA2-like
TrEMBLA0A2P5C2800.0A0A2P5C280_TREOI; WRKY domain containing protein
STRINGXP_010111075.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83493445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.11e-84WRKY family protein