PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G036627.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family HD-ZIP
Protein Properties Length: 307aa    MW: 34739.2 Da    PI: 8.7462
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G036627.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox42.51.1e-132391956
                          HHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
              Homeobox 19 FeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                          F+++++p++++r+ L ++lgL+++qVk+WFqN+R++ k
  HL.SW.v1.0.G036627.1  2 FKECPHPDENQRRLLGRELGLDTKQVKFWFQNKRTQTK 39
                          9*********************************9987 PP
2START28.33.9e-10176299395
                           HHHHHHHHHHHHHHC-TT-EEEE.............EXCCTTEEEEEEESSS..........SCEEEEEEEECCSCHHHHHHHHHCCCG CS
                 START   3 aeeaaqelvkkalaeepgWvkss.............esengdevlqkfeeskv.........dsgealrasgvvdmvlallveellddk 69 
                           a  a++el+k++  ++p+W++ s               + +d + ++f++ ++          + e ++ sg+v m++a+lv ++ld++
  HL.SW.v1.0.G036627.1 176 AAGAMDELIKLIRIDQPLWTRASsssattdhgggrgYTLHRDSYNKIFPQRDTtnhfpcpssARFESSKHSGMVAMNAAQLVDIFLDSN 264
                           66799***************999999****99999989999999999999888999**9999999************************ PP

                           GCT-TT-S....EEEEEEEECTT......EEEEEEE CS
                 START  70 eqWdetla....kaetlevissg......galqlmv 95 
                            +W   ++    ka t+ev+++g      +alq +v
  HL.SW.v1.0.G036627.1 265 -KWVDLFTtiitKARTIEVLEKGdsgnrhAALQMWV 299
                           .88888888888**********98888888888776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007113.815141IPR001356Homeobox domain
PfamPF000463.1E-11139IPR001356Homeobox domain
CDDcd000864.65E-10142No hitNo description
SMARTSM003890.003145IPR001356Homeobox domain
SuperFamilySSF466897.94E-12149IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.9E-12248IPR009057Homeodomain-like
PROSITE profilePS5084815.733165307IPR002913START domain
PfamPF018526.7E-5178299IPR002913START domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
FFKECPHPDE NQRRLLGREL GLDTKQVKFW FQNKRTQTKA QHERADNNVL RAENERIQCE  60
NIAIREALRN VICPACGGPP FGQEERQHSL QKLQLENAQL KKRGAKYTGK PLSEIEKLTS  120
GIPSSAESSF DLQPPALRQA SSSSLNMENA KMNQFHNNHH FRGIIEMERG LMVETAAGAM  180
DELIKLIRID QPLWTRASSS SATTDHGGGR GYTLHRDSYN KIFPQRDTTN HFPCPSSARF  240
ESSKHSGMVA MNAAQLVDIF LDSNKWVDLF TTIITKARTI EVLEKGDSGN RHAALQMWVG  300
DNRIEIN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002526595.21e-113homeobox-leucine zipper protein ROC8 isoform X2
RefseqXP_015579295.11e-113homeobox-leucine zipper protein ROC8 isoform X3
TrEMBLA0A2P5FJ621e-129A0A2P5FJ62_TREOI; Octamer-binding transcription factor
STRINGXP_006493518.11e-109(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10263398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.15e-70homeodomain GLABROUS 11