PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G036341.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family bHLH
Protein Properties Length: 197aa    MW: 21612.2 Da    PI: 9.5434
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G036341.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH130.000191131511255
                           HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           R +++ +++  L +l+ +      +K + a++L +A+ YI+ Lq
  HL.SW.v1.0.G036341.1 113 RKEKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 151
                           6678889999999999998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.331101150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.75E-6111155No hitNo description
SuperFamilySSF474591.31E-10111162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.2E-8115158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MKNNLLYSHP GREEECLQAI NRSNNISSTV WSPPQALAMP VVSSPIMSCV TTTTSLGSNN  60
MLDFSYYNNK PVESGNQNTD QSSEGHSTDT RGAVSNKKAR VQPSPSQPPL KVRKEKLGDR  120
ITALHQLVSP FGKTDTASVL LEAIGYIRFL QSQIEALSSP YLGNASKNMR NYNQQYVSTH  180
FPISQFKLSY NSPPSL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008228480.15e-57PREDICTED: transcription factor bHLH68-like isoform X1
RefseqXP_008228481.15e-57PREDICTED: transcription factor bHLH68-like isoform X2
RefseqXP_008228482.13e-57PREDICTED: transcription factor bHLH68-like isoform X3
RefseqXP_016649113.13e-57PREDICTED: transcription factor bHLH68-like isoform X4
RefseqXP_021829118.13e-57transcription factor bHLH68-like isoform X2
SwissprotQ8S3D14e-35BH068_ARATH; Transcription factor bHLH68
TrEMBLA0A2P5BDQ03e-74A0A2P5BDQ0_PARAD; Myc-type, basic helix-loop-helix (BHLH) domain containing protein
STRINGXP_008228480.12e-56(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12233379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29100.12e-37bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Le Hir R, et al.
    AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana.
    Physiol Plant, 2017. 160(3): p. 312-327
    [PMID:28369972]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]