PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G036296.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family C2H2
Protein Properties Length: 537aa    MW: 55653.4 Da    PI: 9.3583
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G036296.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.13.3e-056486123
                          EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                          + C++C+k F r  nL+ H r H
  HL.SW.v1.0.G036296.1 64 FICEICNKGFQRDQNLQLHRRGH 86
                          89*******************88 PP

2zf-C2H211.10.0012140162123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           +kC +C+k +  +s+ k H + +
  HL.SW.v1.0.G036296.1 140 WKCDKCSKKYAVQSDWKAHSKIC 162
                           58*****************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.4E-56386IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.99E-76386No hitNo description
PfamPF121716.5E-56486IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.8456486IPR007087Zinc finger, C2H2
SMARTSM003550.0226486IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806686IPR007087Zinc finger, C2H2
SMARTSM00355220105135IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.9E-4128161IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.99E-7135160No hitNo description
SMARTSM00355150140160IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009937Biological Processregulation of gibberellic acid mediated signaling pathway
GO:0010029Biological Processregulation of seed germination
GO:0010431Biological Processseed maturation
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 537 aa     Download sequence    Send to blast
MATELDNSST ASGEASVSSS GNHAVAPAAP KSTAKKKRNL PGMPDPDAEV IALSPKTLMA  60
TNRFICEICN KGFQRDQNLQ LHRRGHNLPW KLRQRSSKEV KKRVYVCPEA TCVHHDPSRA  120
LGDLTGIKKH FCRKHGEKKW KCDKCSKKYA VQSDWKAHSK ICGTREYKCD CGTLFSRRDS  180
FITHRAFCDA LAEESAKTKT PTPVPVPAPA LPKKNQTQTS GNMNSESDSK AQPVKSSPPP  240
APPLAPAQSA APASSSVPSG PPQSTVVISS TRPIQTPAEL PENPPRNLEE AAPSAAASLT  300
GSSSSSTTSS SSNGSTSSSV FASLFASSTT SASLQATQSH GFTDLIRGMG RPDCSADLAP  360
SSSLEPISLG LSTSHGSSIF GTAGQERRQY APPPQPAMSA TALLQKAAQM GAAASNASLL  420
RGLGIVSSSS SSGHQENLQW PQRQVEPDNN SVPGLGLGLP CDGNSGLKEL MMGTPSMFGP  480
KQTTLDFLGL GMAAGGSPNG GLSALITSIG SGLDVAAAAA SFGGGEFSGK DIGRSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-35136197364Zinc finger protein JACKDAW
5b3h_F3e-35136197364Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00592DAPTransfer from AT5G66730Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010099839.10.0protein indeterminate-domain 2
SwissprotQ9LVQ70.0IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBLA0A2P5FXR50.0A0A2P5FXR5_TREOI; TFIIH C1-like domain containing protein
STRINGXP_010099839.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22183286
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-101indeterminate(ID)-domain 2
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]