PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G036296.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | C2H2 | ||||||||
Protein Properties | Length: 537aa MW: 55653.4 Da PI: 9.3583 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.1 | 3.3e-05 | 64 | 86 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H HL.SW.v1.0.G036296.1 64 FICEICNKGFQRDQNLQLHRRGH 86 89*******************88 PP | |||||||
2 | zf-C2H2 | 11.1 | 0.0012 | 140 | 162 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H + + HL.SW.v1.0.G036296.1 140 WKCDKCSKKYAVQSDWKAHSKIC 162 58*****************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 1.4E-5 | 63 | 86 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 7.99E-7 | 63 | 86 | No hit | No description |
Pfam | PF12171 | 6.5E-5 | 64 | 86 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE profile | PS50157 | 10.845 | 64 | 86 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.022 | 64 | 86 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 66 | 86 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 220 | 105 | 135 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 6.9E-4 | 128 | 161 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 7.99E-7 | 135 | 160 | No hit | No description |
SMART | SM00355 | 150 | 140 | 160 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009937 | Biological Process | regulation of gibberellic acid mediated signaling pathway | ||||
GO:0010029 | Biological Process | regulation of seed germination | ||||
GO:0010431 | Biological Process | seed maturation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 537 aa Download sequence Send to blast |
MATELDNSST ASGEASVSSS GNHAVAPAAP KSTAKKKRNL PGMPDPDAEV IALSPKTLMA 60 TNRFICEICN KGFQRDQNLQ LHRRGHNLPW KLRQRSSKEV KKRVYVCPEA TCVHHDPSRA 120 LGDLTGIKKH FCRKHGEKKW KCDKCSKKYA VQSDWKAHSK ICGTREYKCD CGTLFSRRDS 180 FITHRAFCDA LAEESAKTKT PTPVPVPAPA LPKKNQTQTS GNMNSESDSK AQPVKSSPPP 240 APPLAPAQSA APASSSVPSG PPQSTVVISS TRPIQTPAEL PENPPRNLEE AAPSAAASLT 300 GSSSSSTTSS SSNGSTSSSV FASLFASSTT SASLQATQSH GFTDLIRGMG RPDCSADLAP 360 SSSLEPISLG LSTSHGSSIF GTAGQERRQY APPPQPAMSA TALLQKAAQM GAAASNASLL 420 RGLGIVSSSS SSGHQENLQW PQRQVEPDNN SVPGLGLGLP CDGNSGLKEL MMGTPSMFGP 480 KQTTLDFLGL GMAAGGSPNG GLSALITSIG SGLDVAAAAA SFGGGEFSGK DIGRSS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 3e-35 | 136 | 197 | 3 | 64 | Zinc finger protein JACKDAW |
5b3h_F | 3e-35 | 136 | 197 | 3 | 64 | Zinc finger protein JACKDAW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00592 | DAP | Transfer from AT5G66730 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010099839.1 | 0.0 | protein indeterminate-domain 2 | ||||
Swissprot | Q9LVQ7 | 0.0 | IDD1_ARATH; Zinc finger protein ENHYDROUS | ||||
TrEMBL | A0A2P5FXR5 | 0.0 | A0A2P5FXR5_TREOI; TFIIH C1-like domain containing protein | ||||
STRING | XP_010099839.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2218 | 32 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50700.1 | 1e-101 | indeterminate(ID)-domain 2 |
Publications ? help Back to Top | |||
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