PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G036285.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family bHLH
Protein Properties Length: 333aa    MW: 36511.2 Da    PI: 6.2469
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G036285.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.95.7e-164796255
                          HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                          r +h+  E+rRR++iN++f+ Lr+l+P++    ++K + a+ L +++eY+++Lq
  HL.SW.v1.0.G036285.1 47 RSKHSVTEQRRRSKINERFQILRDLVPHS----DQKRDTASFLLEVIEYVQYLQ 96
                          899*************************9....8*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.01E-1843116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-2244116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.1394595IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.88E-1447100No hitNo description
PfamPF000102.4E-134796IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.4E-1251101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MRTPAKGHHE EEEFEDDEYG SKKEGPSSNN NSNSKDAKNN DKASAIRSKH SVTEQRRRSK  60
INERFQILRD LVPHSDQKRD TASFLLEVIE YVQYLQEKVH KFEGSYQGWS SEPTKLIPWR  120
NSHWRVQNFV GHPPQTIKNG PGAAFSGKFD ENNMSISPTM LTSPQNLVDS DPSRDVACKT  180
LDRQPEAANK GVPLPIPTLA SMSACTSDGM LTQPLQIPVS ESQSTQCPTT SDGPNQQEEF  240
MVEGGTISVT SAYSQGLLNT LAQVLQNAGL DLSQASISVQ IDLGKRANRV LSAGTSSSKD  300
YENAPSSNQT IAHHRDAGVG EDSDQAQKRL KT*
Functional Description ? help Back to Top
Source Description
UniProtPositive brassinosteroid-signaling protein.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00219DAPTransfer from AT1G69010Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024018285.11e-179transcription factor BIM2
SwissprotQ9CAA41e-113BIM2_ARATH; Transcription factor BIM2
TrEMBLA0A2P5DTX40.0A0A2P5DTX4_TREOI; Basic helix-loop-helix transcription factor
STRINGEMJ237641e-172(Prunus persica)
STRINGXP_010091635.11e-171(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17303382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.11e-100BES1-interacting Myc-like protein 2
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]