PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G036253.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | LBD | ||||||||
Protein Properties | Length: 235aa MW: 25387.4 Da PI: 8.4985 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 87.3 | 2e-27 | 19 | 106 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 +CaaCk+lrr+Ca++C+++pyf ++p+kfa+vhk +lpe++r da++slvyeA+ r+rdPvyG++g+i++lqqq+++ HL.SW.v1.0.G036253.1 19 PCAACKLLRRRCAEECPFSPYFSPQEPQKFAAVHK------------ELPESQRADAANSLVYEANLRLRDPVYGCMGLISALQQQIQT 95 7********************************96............99**************************************** PP DUF260 90 lkaelallkee 100 l+ael+++++e HL.SW.v1.0.G036253.1 96 LQAELNAVRTE 106 ******99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 15.472 | 18 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.5E-26 | 19 | 104 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MGRRVQSFGP PGTLNTITPC AACKLLRRRC AEECPFSPYF SPQEPQKFAA VHKELPESQR 60 ADAANSLVYE ANLRLRDPVY GCMGLISALQ QQIQTLQAEL NAVRTEILRY KFREATTNSH 120 NHHIVSSTNT STSTTTTHQA ALANLMSPHH HHNHNNIHQA VVSIASLPSQ LAISHSTLSP 180 GPPHRLPPPS PPPPPPSIVV SASSTTSSST SSLYTSTNTT GYSSISSDNV PYFD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 5e-36 | 11 | 114 | 3 | 118 | LOB family transfactor Ramosa2.1 |
5ly0_B | 5e-36 | 11 | 114 | 3 | 118 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015874603.1 | 1e-74 | LOB domain-containing protein 13 | ||||
Swissprot | Q9AT61 | 3e-59 | LBD13_ARATH; LOB domain-containing protein 13 | ||||
TrEMBL | A0A2P5CYR2 | 1e-91 | A0A2P5CYR2_TREOI; Lateral organ boundaries domain containing protein | ||||
STRING | XP_008244000.1 | 7e-71 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2298 | 34 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30340.1 | 2e-60 | LOB domain-containing protein 13 |
Publications ? help Back to Top | |||
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