PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G036184.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | Trihelix | ||||||||
Protein Properties | Length: 250aa MW: 27152.4 Da PI: 5.2762 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 86.5 | 3.2e-27 | 44 | 138 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcp 80 rWt+qe+l+Li+++r e+++rr + + +p+W++vs+++r +g++r+p+qC+++w+nl+++ykkike+e +r+++s s ++ HL.SW.v1.0.G036184.1 44 RWTRQEILVLIQGKRVAESKVRRIRtagaafgsgQVEPKWASVSSYCRMHGVNRGPVQCRKRWSNLAGDYKKIKEWELQRKDGSDSFWA 132 8*********************844445566666**********************************************999999999 PP trihelix 81 yfdqle 86 + ++l+ HL.SW.v1.0.G036184.1 133 MRNDLR 138 999986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 1.6E-12 | 44 | 134 | No hit | No description |
PROSITE profile | PS50090 | 6.4 | 44 | 110 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 2.3E-5 | 44 | 109 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MALELSLPTN PVDTEADGVT NGVDARPSST DGGDDGRRAP RLPRWTRQEI LVLIQGKRVA 60 ESKVRRIRTA GAAFGSGQVE PKWASVSSYC RMHGVNRGPV QCRKRWSNLA GDYKKIKEWE 120 LQRKDGSDSF WAMRNDLRRE RKLPGFFDKE VYDILDAGSG GGVGQQATPV VAPPPAEEME 180 KDATAEEPEE NTVMFDSRRG ATAEDGMFSD FEQEDSVRSP VKEAAAATAT KEAPPAASMG 240 IPAVPISCK* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor that binds DNA and plays a negative role in regulating microbe-associated molecular patterns-(MAMPs, e.g. flg22, elf18, chitin, and LPS) triggered immunity (PTI) by negatively regulating immune gene expression. {ECO:0000269|PubMed:25770109}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015895940.1 | 1e-131 | trihelix transcription factor ASR3 | ||||
Swissprot | Q8VZ20 | 1e-75 | ASR3_ARATH; Trihelix transcription factor ASR3 | ||||
TrEMBL | A0A2P5F1X8 | 1e-127 | A0A2P5F1X8_TREOI; Homeodomain-like | ||||
STRING | XP_010100033.1 | 1e-106 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2165 | 33 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33550.1 | 8e-77 | Trihelix family protein |
Publications ? help Back to Top | |||
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