PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G036184.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family Trihelix
Protein Properties Length: 250aa    MW: 27152.4 Da    PI: 5.2762
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G036184.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix86.53.2e-2744138186
              trihelix   1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcp 80 
                           rWt+qe+l+Li+++r  e+++rr +         + +p+W++vs+++r +g++r+p+qC+++w+nl+++ykkike+e +r+++s s ++
  HL.SW.v1.0.G036184.1  44 RWTRQEILVLIQGKRVAESKVRRIRtagaafgsgQVEPKWASVSSYCRMHGVNRGPVQCRKRWSNLAGDYKKIKEWELQRKDGSDSFWA 132
                           8*********************844445566666**********************************************999999999 PP

              trihelix  81 yfdqle 86 
                           + ++l+
  HL.SW.v1.0.G036184.1 133 MRNDLR 138
                           999986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.6E-1244134No hitNo description
PROSITE profilePS500906.444110IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.3E-544109IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MALELSLPTN PVDTEADGVT NGVDARPSST DGGDDGRRAP RLPRWTRQEI LVLIQGKRVA  60
ESKVRRIRTA GAAFGSGQVE PKWASVSSYC RMHGVNRGPV QCRKRWSNLA GDYKKIKEWE  120
LQRKDGSDSF WAMRNDLRRE RKLPGFFDKE VYDILDAGSG GGVGQQATPV VAPPPAEEME  180
KDATAEEPEE NTVMFDSRRG ATAEDGMFSD FEQEDSVRSP VKEAAAATAT KEAPPAASMG  240
IPAVPISCK*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that binds DNA and plays a negative role in regulating microbe-associated molecular patterns-(MAMPs, e.g. flg22, elf18, chitin, and LPS) triggered immunity (PTI) by negatively regulating immune gene expression. {ECO:0000269|PubMed:25770109}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015895940.11e-131trihelix transcription factor ASR3
SwissprotQ8VZ201e-75ASR3_ARATH; Trihelix transcription factor ASR3
TrEMBLA0A2P5F1X81e-127A0A2P5F1X8_TREOI; Homeodomain-like
STRINGXP_010100033.11e-106(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21653375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.18e-77Trihelix family protein
Publications ? help Back to Top
  1. Vidal EA, et al.
    Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots.
    BMC Genomics, 2013. 14: p. 701
    [PMID:24119003]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]