PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G036155.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | VOZ | ||||||||
Protein Properties | Length: 462aa MW: 51233.7 Da PI: 6.8924 | ||||||||
Description | VOZ family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | VOZ | 349.4 | 1.5e-107 | 217 | 400 | 28 | 217 |
VOZ 28 dycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspwnaaelfdlsllegetirewlffdkpr 116 + ssfha+lalneg+pg++pvlrp+gi+lkdgllfaalsak+qgk+vgipecegaatakspwna+ +legetirewlffdkpr HL.SW.v1.0.G036155.1 217 NKSSSFHAALALNEGPPGMAPVLRPGGIGLKDGLLFAALSAKAQGKDVGIPECEGAATAKSPWNAP------VLEGETIREWLFFDKPR 299 6789*************************************************************9......79*************** PP VOZ 117 rafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldalalyrlelklvdekksakgkvskdsl 205 rafesgnrkqrslpdysgrgwhesrkqvm+efgglkrsyymdpqp+++ ewhlyeyein++da+alyrlelkl+d+kk+ak+k+++ds+ HL.SW.v1.0.G036155.1 300 RAFESGNRKQRSLPDYSGRGWHESRKQVMNEFGGLKRSYYMDPQPLNHIEWHLYEYEINKCDACALYRLELKLADGKKNAKAKLTNDSV 388 ***************************************************************************************** PP VOZ 206 adlqkklgrlta 217 adlqk++grl+a HL.SW.v1.0.G036155.1 389 ADLQKQMGRLSA 400 **********97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 462 aa Download sequence Send to blast |
MMDKGSKSKC KSVTHKLFKD KAKNRVDDLQ AVFMDLQFAR KESRTIDMAV LEEQVNQMLR 60 EWKAELNEPS PASSLQQGGN PGSFSSDICR LLQLCEEEDD ATSPLAAPKP EPTDQTFQVG 120 ETVGFGMNQV QQEHSFPLVD CKNSTSRVCN VSVNNLEGAT HLDYHQFELH QEFGHNFYTD 180 FNGTGVSGED ALPHFWGRCF SQSFSLLSLP VAKVIINKSS SFHAALALNE GPPGMAPVLR 240 PGGIGLKDGL LFAALSAKAQ GKDVGIPECE GAATAKSPWN APVLEGETIR EWLFFDKPRR 300 AFESGNRKQR SLPDYSGRGW HESRKQVMNE FGGLKRSYYM DPQPLNHIEW HLYEYEINKC 360 DACALYRLEL KLADGKKNAK AKLTNDSVAD LQKQMGRLSA EFPSPESKRS VKGRSKLTAK 420 VGVGNVYSTT NRVPSTNGTF GYGLGAPYDY LVDNMTEYYL T* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269|PubMed:15295067, ECO:0000269|PubMed:22904146}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By far-red light. {ECO:0000269|PubMed:22904146}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010111154.1 | 0.0 | transcription factor VOZ1 isoform X1 | ||||
Refseq | XP_024031048.1 | 0.0 | transcription factor VOZ1 isoform X1 | ||||
Refseq | XP_024031049.1 | 0.0 | transcription factor VOZ1 isoform X1 | ||||
Swissprot | Q9SGQ0 | 0.0 | VOZ1_ARATH; Transcription factor VOZ1 | ||||
TrEMBL | A0A2P5C7R2 | 0.0 | A0A2P5C7R2_TREOI; VOZ1 transcription factor | ||||
STRING | XP_010111154.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1498 | 34 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28520.2 | 0.0 | vascular plant one zinc finger protein |
Publications ? help Back to Top | |||
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