PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G035803.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

C2H2

Protein Properties

Length: 425aa MW: 46606.6 Da PI: 8.9585

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G035803.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.5	1.2e-05	19	41	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H HL.SW.v1.0.G035803.1 19 FVCEICNKGFQRDQNLQLHRRGH 41 89*******************88 PP
2	zf-C2H2	12.4	0.00046	95	117	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +t+ HL.SW.v1.0.G035803.1 95 WKCEKCSKIYAVQSDWKAHSKTC 117 58*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	1.3E-5	18	41	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	3.29E-6	18	41	No hit	No description
PROSITE profile	PS50157	10.949	19	41	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.017	19	41	IPR015880	Zinc finger, C2H2-like
Pfam	PF12171	6.5E-5	19	41	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE pattern	PS00028	0	21	41	IPR007087	Zinc finger, C2H2
SMART	SM00355	260	60	90	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	1.9E-4	83	116	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	3.29E-6	90	115	No hit	No description
SMART	SM00355	170	95	115	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 425 aa Download sequence Send to blast
PDAEVIALSP RTLLATNRFV CEICNKGFQR DQNLQLHRRG HNLPWKLKQR SSKEIKKRAY 60 VCPEPTCVHH HPSRALGDLT GIKKHYCRKH GEKKWKCEKC SKIYAVQSDW KAHSKTCGTR 120 EYRCDCGTLF SRKDSFITHR AFCDALAEES ARLSAAAVAA AAAAANPIQP LFPFSTITHN 180 YTNQPPQPIH IWDTPQQNPN PSTTQPRPLL HMIKPETHHF PTPPPHSQPP LMIFQDSTAQ 240 QPEPQKGLIG SPFQTFHVSS QMASSNAATS AHLSATALLQ KAATVGAVAS GAHCQGQGHD 300 QSVGHVTEFG RVMSRHPVMN EFILGRGLTS DDLATWRKSD RLTRDFLGLT ADVNNNNNSN 360 NNIIVGGGGG GGGESLGNGS ANVKDMLTYT GGVEFPPFDQ RVHSSLMKPQ VFGFVEAATQ 420 TWADC

Sequence ? help Back to Top

Protein Sequence Length: 425 aa Download sequence Send to blast

PDAEVIALSP RTLLATNRFV CEICNKGFQR DQNLQLHRRG HNLPWKLKQR SSKEIKKRAY  60
VCPEPTCVHH HPSRALGDLT GIKKHYCRKH GEKKWKCEKC SKIYAVQSDW KAHSKTCGTR  120
EYRCDCGTLF SRKDSFITHR AFCDALAEES ARLSAAAVAA AAAAANPIQP LFPFSTITHN  180
YTNQPPQPIH IWDTPQQNPN PSTTQPRPLL HMIKPETHHF PTPPPHSQPP LMIFQDSTAQ  240
QPEPQKGLIG SPFQTFHVSS QMASSNAATS AHLSATALLQ KAATVGAVAS GAHCQGQGHD  300
QSVGHVTEFG RVMSRHPVMN EFILGRGLTS DDLATWRKSD RLTRDFLGLT ADVNNNNNSN  360
NNIIVGGGGG GGGESLGNGS ANVKDMLTYT GGVEFPPFDQ RVHSSLMKPQ VFGFVEAATQ  420
TWADC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	1e-36	91	155	3	67	Zinc finger protein JACKDAW
5b3h_F	1e-36	91	155	3	67	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024164997.1	1e-167	protein indeterminate-domain 12
Swissprot	O22759	1e-114	IDD12_ARATH; Protein indeterminate-domain 12
TrEMBL	A0A2P5FB11	0.0	A0A2P5FB11_TREOI; TFIIH C1-like domain containing protein
STRING	XP_004290634.1	1e-165	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF181	34	275

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03840.2	5e-96	C2H2 family protein

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]