PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | HL.SW.v1.0.G035673.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 253aa MW: 27211.7 Da PI: 4.5584 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.9 | 3.7e-05 | 229 | 251 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C+ C+k+F++ L++H + H HL.SW.v1.0.G035673.1 229 SCKTCSKTFNSDKALESHTKAkH 251 6*****************99877 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 10.263 | 228 | 252 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 230 | 251 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009294 | Biological Process | DNA mediated transformation | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0010162 | Biological Process | seed dormancy process | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 253 aa Download sequence Send to blast |
AVLGETKSKG GETVYLYVKI GDQKFVLANL SLDKFPQVTF DLVFDQEVEV SHNWKNGKQY 60 LTDSSDEEAE VPVTAVENGK GAEKVAAKPV VGKSNDDAKP EAYGKAKVKL VEPSKDDEDD 120 DSDDSDDDES DEMDSEDESD EDMIEGDDSS SDEEDDDETP KKPEVIKKRP TESATKTPVS 180 SKKAKVASPK SDKKAAHVGT PHPSKKAAAK SPATTDKSKQ TPKSAGQVSC KTCSKTFNSD 240 KALESHTKAK HV* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024031877.1 | 6e-64 | histone deacetylase HDT1 isoform X1 | ||||
TrEMBL | W9R3F0 | 3e-62 | W9R3F0_9ROSA; Histone deacetylase HDT1 | ||||
STRING | XP_010089160.1 | 6e-63 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1025 | 30 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G44750.2 | 1e-15 | histone deacetylase 3 |