PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G035641.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family CO-like
Protein Properties Length: 328aa    MW: 36075.1 Da    PI: 6.2403
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G035641.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box26.51.3e-08436436
              zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg 36
                          + C+ +++  ++l+C+ +  +lC +C ++ H  
  HL.SW.v1.0.G035641.1  4 KLCDSCKSATATLYCRADAAFLCVTCDSNVHAA 36
                          68***************************9955 PP
2zf-B_box28.23.8e-094691342
              zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                           ++C+ +e+ +++  C+ +   lC +C   +H+       H++vp+
  HL.SW.v1.0.G035641.1 46 VWVCEVCEQAPAHVTCKADAAALCVTCDRDIHSAnplarrHERVPI 91
                          689*****************************66899999*99997 PP
3CCT706.2e-24275318144
                   CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                           Rea++lRY+eKrk+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++
  HL.SW.v1.0.G035641.1 275 REARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRT 318
                           9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003362.1E-13148IPR000315B-box-type zinc finger
PROSITE profilePS5011910.409142IPR000315B-box-type zinc finger
PfamPF006435.8E-6435IPR000315B-box-type zinc finger
CDDcd000215.73E-9548No hitNo description
PROSITE profilePS5011910.9934491IPR000315B-box-type zinc finger
PfamPF006431.2E-74691IPR000315B-box-type zinc finger
CDDcd000211.56E-94791No hitNo description
SMARTSM003362.8E-114991IPR000315B-box-type zinc finger
PROSITE profilePS5101716.787275317IPR010402CCT domain
PfamPF062034.8E-18275317IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MASKLCDSCK SATATLYCRA DAAFLCVTCD SNVHAANKLA SLHARVWVCE VCEQAPAHVT  60
CKADAAALCV TCDRDIHSAN PLARRHERVP ITPLYESVNS AKSNGAAVNF LNDRYFPEDA  120
EPDAAEVSTE EAEAASWLLP NPKAMESPDL NSGQYVFPDM VPYLDLDYGH LDPKLEAQEQ  180
NSSGTDGVVP VHSKSSQSQP PMANEQCYEM DFSGSKHFVY GYNAQQLSHS VSSSSLDVGV  240
VPDGNTMADG YPNKAMSSNG SDSARQPAQF SSADREARVL RYREKRKNRK FEKTIRYASR  300
KAYAETRPRI KGRFAKRTEV ELEADRIS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012076376.11e-169zinc finger protein CONSTANS-LIKE 4
SwissprotQ940T91e-137COL4_ARATH; Zinc finger protein CONSTANS-LIKE 4
TrEMBLA0A2P5DIR00.0A0A2P5DIR0_PARAD; Zinc finger-domain containing protein
STRINGXP_010108302.11e-167(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13023493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24930.11e-136CONSTANS-like 4