PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G035349.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family C3H
Protein Properties Length: 273aa    MW: 30800.2 Da    PI: 7.5355
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G035349.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.11.1e-0685105626
                           -SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                           C+ f+ +  C+ Gd+C FaHg
  HL.SW.v1.0.G035349.1  85 CPAFRNGASCSKGDTCEFAHG 105
                           88899977************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.87879107IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.09E-579110IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.2E-679108IPR000571Zinc finger, CCCH-type
SMARTSM003568.0E-579106IPR000571Zinc finger, CCCH-type
PfamPF006428.9E-584105IPR000571Zinc finger, CCCH-type
SMARTSM0035613115138IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MLKGVNPSCV YDFSDHHFSG IAAAEYNDRV DDAIYGSDEF RMYAYKIKRC PRMRSHDWTE  60
CPYAHRGEKA QRRDPRKFNY SAIVCPAFRN GASCSKGDTC EFAHGVFEYW LHPARYRTRA  120
CNSGQLCQRK VCFFAHSPEQ LRPETKSKRH SHYAYRPTAV AREPVEVVLN GCGDHVITAG  180
RTAENINING ADGATSSPYF AKNNDNYIDD HGDYGHDDYN DSFQKFADFL KSLRALKIRD  240
MGGDGGGRIM SSGLDVSESD LPHVEWISKL VQ*
Functional Description ? help Back to Top
Source Description
UniProtEmbryo-specific transcription factor required at the globular to heart stage transition in embryo development. {ECO:0000269|PubMed:9501112}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010109132.11e-112zinc finger CCCH domain-containing protein 54
SwissprotO650362e-76C3H54_ARATH; Zinc finger CCCH domain-containing protein 54
TrEMBLA0A2P5F3S91e-130A0A2P5F3S9_TREOI; Zinc finger, CCCH-type
STRINGXP_010109132.11e-112(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF141721011
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07500.12e-77C3H family protein