PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G035244.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 729aa MW: 79569 Da PI: 5.8279 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 64.4 | 1.6e-20 | 62 | 117 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++e+e++F+++++p+ ++r+eL+++lgL+ qVk+WFqN+R+++k HL.SW.v1.0.G035244.1 62 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 117 688999***********************************************999 PP | |||||||
2 | START | 223.4 | 7e-70 | 253 | 473 | 1 | 206 |
HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S... CS START 1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla... 77 ela +a++el+++a+ +ep+W +s +++de++++f+++ + ++ ea+r+++vv+m++ +lve+l+d++ qW++ + HL.SW.v1.0.G035244.1 253 ELAVAAMEELIRMAQMGEPLWITSLdgasAVLEEDEYVRTFPRGIGpkpagFKCEASRETAVVIMNHINLVEILMDVN-QWSTVFSgiv 340 57899********************999999************999********************************.********** PP .EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEEC CS START 78 .kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepks 158 +a+ lev+s+g galq+m+ae+q++splvp R++++vRy++q+ +g+w++vdvS+d+ ++ p vR++++pSg+li++++ HL.SW.v1.0.G035244.1 341 sRAMALEVLSTGvagnfnGALQVMTAEFQVPSPLVPtRESYYVRYCKQHADGTWAVVDVSLDHLRPSPA----VRCRRRPSGCLIQEMP 425 ******************************************************************995....**************** PP TCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 159 nghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 ng+skvtwvehv++++r +h+l+++lv+sg+ +gak+wvatl+rqce+ HL.SW.v1.0.G035244.1 426 NGYSKVTWVEHVEVDDRGVHNLYKQLVNSGHGFGAKRWVATLDRQCER 473 **********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.8E-23 | 41 | 117 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.3E-19 | 51 | 119 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.957 | 59 | 119 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.8E-20 | 60 | 123 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.48E-19 | 62 | 120 | No hit | No description |
Pfam | PF00046 | 4.1E-18 | 62 | 117 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 94 | 117 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 45.627 | 244 | 476 | IPR002913 | START domain |
SuperFamily | SSF55961 | 3.98E-38 | 245 | 475 | No hit | No description |
CDD | cd08875 | 2.31E-130 | 248 | 472 | No hit | No description |
SMART | SM00234 | 4.6E-63 | 253 | 473 | IPR002913 | START domain |
Pfam | PF01852 | 5.8E-59 | 254 | 473 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 2.5E-7 | 349 | 455 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 5.01E-24 | 492 | 720 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010090 | Biological Process | trichome morphogenesis | ||||
GO:0048497 | Biological Process | maintenance of floral organ identity | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 729 aa Download sequence Send to blast |
MMEGGHQLLH PLDMAAQNTT SESDPNARLG RDDDVFDSAT KSGSENQEGA SGDDHDQQRP 60 KKKRYHRHTQ HQIQEMEAFF KECPHPDDKQ RKELSRELGL EPLQVKFWFQ NKRTQMKTQH 120 ERHENTQLRT ENDKLRADNM RYREALSNAS CPNCGGPTAI GEMSFDEHHL RLENARLREE 180 IDRISAIAAK YVGKPVVNYP LLSSPVTPRP LELGVGNFGT QAGIGGEMYG GATGDLLRTM 240 SAPNEADKPM IIELAVAAME ELIRMAQMGE PLWITSLDGA SAVLEEDEYV RTFPRGIGPK 300 PAGFKCEASR ETAVVIMNHI NLVEILMDVN QWSTVFSGIV SRAMALEVLS TGVAGNFNGA 360 LQVMTAEFQV PSPLVPTRES YYVRYCKQHA DGTWAVVDVS LDHLRPSPAV RCRRRPSGCL 420 IQEMPNGYSK VTWVEHVEVD DRGVHNLYKQ LVNSGHGFGA KRWVATLDRQ CERLASAMAT 480 NIPTGDVGVI TNQEGRKSML KLAERMVISF CAGVSASTTH TWTTLSGTGA DDVRVMTRKS 540 VDDPGRPPGI VLSAATSFWL PVSPKRVFDF LRDENSRSEW DILSNGGVVQ EMAHIANGRD 600 TGNCVSLLRS ANSSQSNMLI LQESCTDQTA SFVIYAPVDI VAMNVVLNGG DPDYVALLPS 660 GFAILPDGTG GGGIEPCSSG GSLLTVAFQI LVDSVPTAKL SLGSVATVNN LIACTVERIK 720 ASLSCETA* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010109517.1 | 0.0 | homeobox-leucine zipper protein HDG2 isoform X1 | ||||
Refseq | XP_024029967.1 | 0.0 | homeobox-leucine zipper protein HDG2 isoform X2 | ||||
Swissprot | Q94C37 | 0.0 | HDG2_ARATH; Homeobox-leucine zipper protein HDG2 | ||||
TrEMBL | A0A2P5D604 | 0.0 | A0A2P5D604_PARAD; Octamer-binding transcription factor | ||||
STRING | XP_010109517.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1508 | 34 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G05230.3 | 0.0 | homeodomain GLABROUS 2 |