PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G035244.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family HD-ZIP
Protein Properties Length: 729aa    MW: 79569 Da    PI: 5.8279
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G035244.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.41.6e-2062117156
                           TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
              Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                           +++ +++t++q++e+e++F+++++p+ ++r+eL+++lgL+  qVk+WFqN+R+++k
  HL.SW.v1.0.G035244.1  62 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 117
                           688999***********************************************999 PP

2START223.47e-702534731206
                           HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S... CS
                 START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla... 77 
                           ela +a++el+++a+ +ep+W +s       +++de++++f+++ +     ++ ea+r+++vv+m++ +lve+l+d++ qW++ +    
  HL.SW.v1.0.G035244.1 253 ELAVAAMEELIRMAQMGEPLWITSLdgasAVLEEDEYVRTFPRGIGpkpagFKCEASRETAVVIMNHINLVEILMDVN-QWSTVFSgiv 340
                           57899********************999999************999********************************.********** PP

                           .EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEEC CS
                 START  78 .kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepks 158
                            +a+ lev+s+g      galq+m+ae+q++splvp R++++vRy++q+ +g+w++vdvS+d+ ++ p     vR++++pSg+li++++
  HL.SW.v1.0.G035244.1 341 sRAMALEVLSTGvagnfnGALQVMTAEFQVPSPLVPtRESYYVRYCKQHADGTWAVVDVSLDHLRPSPA----VRCRRRPSGCLIQEMP 425
                           ******************************************************************995....**************** PP

                           TCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                 START 159 nghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                           ng+skvtwvehv++++r +h+l+++lv+sg+ +gak+wvatl+rqce+
  HL.SW.v1.0.G035244.1 426 NGYSKVTWVEHVEVDDRGVHNLYKQLVNSGHGFGAKRWVATLDRQCER 473
                           **********************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.8E-2341117IPR009057Homeodomain-like
SuperFamilySSF466891.3E-1951119IPR009057Homeodomain-like
PROSITE profilePS5007116.95759119IPR001356Homeobox domain
SMARTSM003894.8E-2060123IPR001356Homeobox domain
CDDcd000862.48E-1962120No hitNo description
PfamPF000464.1E-1862117IPR001356Homeobox domain
PROSITE patternPS00027094117IPR017970Homeobox, conserved site
PROSITE profilePS5084845.627244476IPR002913START domain
SuperFamilySSF559613.98E-38245475No hitNo description
CDDcd088752.31E-130248472No hitNo description
SMARTSM002344.6E-63253473IPR002913START domain
PfamPF018525.8E-59254473IPR002913START domain
Gene3DG3DSA:3.30.530.202.5E-7349455IPR023393START-like domain
SuperFamilySSF559615.01E-24492720No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010090Biological Processtrichome morphogenesis
GO:0048497Biological Processmaintenance of floral organ identity
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 729 aa     Download sequence    Send to blast
MMEGGHQLLH PLDMAAQNTT SESDPNARLG RDDDVFDSAT KSGSENQEGA SGDDHDQQRP  60
KKKRYHRHTQ HQIQEMEAFF KECPHPDDKQ RKELSRELGL EPLQVKFWFQ NKRTQMKTQH  120
ERHENTQLRT ENDKLRADNM RYREALSNAS CPNCGGPTAI GEMSFDEHHL RLENARLREE  180
IDRISAIAAK YVGKPVVNYP LLSSPVTPRP LELGVGNFGT QAGIGGEMYG GATGDLLRTM  240
SAPNEADKPM IIELAVAAME ELIRMAQMGE PLWITSLDGA SAVLEEDEYV RTFPRGIGPK  300
PAGFKCEASR ETAVVIMNHI NLVEILMDVN QWSTVFSGIV SRAMALEVLS TGVAGNFNGA  360
LQVMTAEFQV PSPLVPTRES YYVRYCKQHA DGTWAVVDVS LDHLRPSPAV RCRRRPSGCL  420
IQEMPNGYSK VTWVEHVEVD DRGVHNLYKQ LVNSGHGFGA KRWVATLDRQ CERLASAMAT  480
NIPTGDVGVI TNQEGRKSML KLAERMVISF CAGVSASTTH TWTTLSGTGA DDVRVMTRKS  540
VDDPGRPPGI VLSAATSFWL PVSPKRVFDF LRDENSRSEW DILSNGGVVQ EMAHIANGRD  600
TGNCVSLLRS ANSSQSNMLI LQESCTDQTA SFVIYAPVDI VAMNVVLNGG DPDYVALLPS  660
GFAILPDGTG GGGIEPCSSG GSLLTVAFQI LVDSVPTAKL SLGSVATVNN LIACTVERIK  720
ASLSCETA*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010109517.10.0homeobox-leucine zipper protein HDG2 isoform X1
RefseqXP_024029967.10.0homeobox-leucine zipper protein HDG2 isoform X2
SwissprotQ94C370.0HDG2_ARATH; Homeobox-leucine zipper protein HDG2
TrEMBLA0A2P5D6040.0A0A2P5D604_PARAD; Octamer-binding transcription factor
STRINGXP_010109517.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15083499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05230.30.0homeodomain GLABROUS 2