PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G035198.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

C3H

Protein Properties

Length: 749aa MW: 82989 Da PI: 6.9012

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G035198.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.9	3.1e-07	155	179	5	26
--SGGGGTS...--TTTTT-SS-SS CS zf-CCCH 5 lCrffartG...tCkyGdrCkFaHg 26 +C+ a+tG C+y d+C+F+H+ HL.SW.v1.0.G035198.1 155 ICPEVAKTGdpsSCPYSDKCRFSHD 179 7***********************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1000.10	1.7E-4	147	181	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	11.807	150	181	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0027	150	180	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	5.9E-5	155	179	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	28	191	218	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	7.301	194	219	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:3.20.20.70	1.4E-69	392	635	IPR013785	Aldolase-type TIM barrel
CDD	cd02801	2.84E-86	396	631	No hit	No description
SuperFamily	SSF51395	9.42E-61	396	709	No hit	No description
Pfam	PF01207	2.7E-48	399	651	IPR001269	tRNA-dihydrouridine synthase
PROSITE pattern	PS01136	0	480	498	IPR018517	tRNA-dihydrouridine synthase, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008033	Biological Process	tRNA processing
GO:0055114	Biological Process	oxidation-reduction process
GO:0017150	Molecular Function	tRNA dihydrouridine synthase activity
GO:0046872	Molecular Function	metal ion binding
GO:0050660	Molecular Function	flavin adenine dinucleotide binding

Sequence ? help Back to Top
Protein Sequence Length: 749 aa Download sequence Send to blast
MAEWSKAPDS SSGPLTRAER KKKNRRIVCL KSPTERVLAQ SPPSPLGTRK YAMDESPADV 60 QLVQEPMDSA TPEVAASNGQ PEYRTPEELV AKAIAPVKRE FLRPHPVRPV SNNQEDGAVS 120 ESKEKPAQPS VVKEKKSKRQ AKRERRQQQK SSSNICPEVA KTGDPSSCPY SDKCRFSHDV 180 EAFKNQKLDD LEGECPFVTA EEPCPYGLAC RFLSTHPEGD SGVKSARRNS SEVNGLRKDV 240 QRLLWKNKMN FPKADAKVKA LGLMGPANSK AKSSENKPDG DDHITANNCD AANGNGSSAL 300 VNDTEVENTV VLEENDDVED ASESNVPRPL KKPKCVDADD CSDKVEVGGV SGTEKVVCES 360 SKQPEADSTA ELLTPETDGS LKVHPREKKI IDFRDKLYLA PLTTVGNLPF RRVCKVLGAD 420 VTCGEMAMCT NLLQGQASEW ALLRRHASED LFGVQICGAF ADTVSRAVEL IDQECTLDFI 480 DINMGCPIDL VVNKGAGSAL LMKPMRMKGI IEAASGTVEK PITVKVRTAY FEGKNRIDSL 540 IADMGNWGAS AVTIHGRSRQ QRYSKLADWE YVYQCAKKAP DTLHVLGNGD IFSYLDWNKH 600 KVDCPELSTC MIARGALVKP WLFTEIKEQR HWDISSGERF DILKKFVRFG LEHWGSDTKG 660 VETTRRFLLE WLSYTCRYVP VGLLDVIPQR LNWRQPSYFG RNDLETLMAS DSAADWIRIS 720 EMLLGKVPED FTFAPKHKSN AYDRAENG*

Sequence ? help Back to Top

Protein Sequence Length: 749 aa Download sequence Send to blast

MAEWSKAPDS SSGPLTRAER KKKNRRIVCL KSPTERVLAQ SPPSPLGTRK YAMDESPADV  60
QLVQEPMDSA TPEVAASNGQ PEYRTPEELV AKAIAPVKRE FLRPHPVRPV SNNQEDGAVS  120
ESKEKPAQPS VVKEKKSKRQ AKRERRQQQK SSSNICPEVA KTGDPSSCPY SDKCRFSHDV  180
EAFKNQKLDD LEGECPFVTA EEPCPYGLAC RFLSTHPEGD SGVKSARRNS SEVNGLRKDV  240
QRLLWKNKMN FPKADAKVKA LGLMGPANSK AKSSENKPDG DDHITANNCD AANGNGSSAL  300
VNDTEVENTV VLEENDDVED ASESNVPRPL KKPKCVDADD CSDKVEVGGV SGTEKVVCES  360
SKQPEADSTA ELLTPETDGS LKVHPREKKI IDFRDKLYLA PLTTVGNLPF RRVCKVLGAD  420
VTCGEMAMCT NLLQGQASEW ALLRRHASED LFGVQICGAF ADTVSRAVEL IDQECTLDFI  480
DINMGCPIDL VVNKGAGSAL LMKPMRMKGI IEAASGTVEK PITVKVRTAY FEGKNRIDSL  540
IADMGNWGAS AVTIHGRSRQ QRYSKLADWE YVYQCAKKAP DTLHVLGNGD IFSYLDWNKH  600
KVDCPELSTC MIARGALVKP WLFTEIKEQR HWDISSGERF DILKKFVRFG LEHWGSDTKG  660
VETTRRFLLE WLSYTCRYVP VGLLDVIPQR LNWRQPSYFG RNDLETLMAS DSAADWIRIS  720
EMLLGKVPED FTFAPKHKSN AYDRAENG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6ei9_A	1e-24	393	628	27	258	tRNA-dihydrouridine synthase B
6ei9_B	1e-24	393	628	27	258	tRNA-dihydrouridine synthase B
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010095677.1	0.0	tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
Swissprot	Q9T0J6	0.0	DUS3L_ARATH; tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
TrEMBL	A0A2P5FQ79	0.0	A0A2P5FQ79_TREOI; tRNA-dihydrouridine(47) synthase [NAD(P)(+)]
STRING	XP_010095677.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF10889	12	12

Publications ? help Back to Top
Szponarski W,Sommerer N,Boyer JC,Rossignol M,Gibrat R Large-scale characterization of integral proteins from Arabidopsis vacuolar membrane by two-dimensional liquid chromatography. Proteomics, 2004. 4(2): p. 397-406 [PMID:14760709]