PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G034746.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family bHLH
Protein Properties Length: 370aa    MW: 40620.6 Da    PI: 4.7519
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G034746.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.41.6e-102893291055
                           HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           r+RR++iN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  HL.SW.v1.0.G034746.1 289 RKRREKINERLKVLQNLVPNG-----TKVDISTMLEEAVQYVKFLQ 329
                           9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.332279328IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.27E-14279343IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.8E-13284338IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.4E-12285334IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.49E-12288333No hitNo description
PfamPF000107.9E-8289329IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0016049Biological Processcell growth
GO:0048766Biological Processroot hair initiation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MEPTLGAISA GEWSSFSGIY CSEETDHNEH HFMASDHHFL AGCGVTNDDH LTIGTSSLDD  60
QIPFTIWPGT SYSHCSSVSE IDNSYTGSFP QGMISSSPYS HPVTWLTSNI SVEFSEECQN  120
ENFFLVDADH SQEWQNQEMS NGTINGEESG GNQLTSAADH FSPHKWECDQ MTVPESTMAS  180
GIISGNSKKR SSSPAEQEPK SKRNVRSRKS KKQLALMSDN EEDGNNAGTD KGHSNSSLSE  240
EQHSNDSLDE ELGERALSLS PKEPTALNLS GKARASRGSA TDPQSVYARK RREKINERLK  300
VLQNLVPNGT KVDISTMLEE AVQYVKFLQL QIKLLSSDDL WMYAPLAYNG MDMGMGIGLD  360
HLRLAASRQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1288293RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010111528.13e-89transcription factor bHLH84
TrEMBLA0A2P5EYE10.0A0A2P5EYE1_TREOI; Basic helix-loop-helix transcription factor
STRINGXP_010111528.11e-88(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80733121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.17e-55bHLH family protein