PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G034714.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | LBD | ||||||||
Protein Properties | Length: 241aa MW: 26463 Da PI: 9.2684 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 122.4 | 2.5e-38 | 10 | 108 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 +CaaCk+lrrkC ++C++apyfp++qp+kfa vh+++G+ nv k+l+ ++ +re+a++sl+yeA+ar+rdPvyG++g+i+ l+++l++ HL.SW.v1.0.G034714.1 10 PCAACKFLRRKCMPGCIFAPYFPSDQPQKFASVHRIYGTGNVAKILNGINAAHREEAVNSLAYEAQARLRDPVYGVIGFISILHNHLNH 98 7**************************************************************************************** PP DUF260 90 lkaelallke 99 ++a l+ + + HL.SW.v1.0.G034714.1 99 ARARLNNASN 108 ***9998776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 24.585 | 9 | 110 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.3E-37 | 10 | 106 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MNIPPPPPPP CAACKFLRRK CMPGCIFAPY FPSDQPQKFA SVHRIYGTGN VAKILNGINA 60 AHREEAVNSL AYEAQARLRD PVYGVIGFIS ILHNHLNHAR ARLNNASNDL GGHTSPHPQP 120 QRIINPPPNG VPPMPNLKVN PNHQQQRQQL PQLRPFFFEN IPRPQHPQQQ MINNVTFDYM 180 GEGGPFGSMA NPDMMEHYNS QMLMAGSIFN RGGGRSSSVA ATDGACESNN NNTNLNGQLM 240 * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 5e-40 | 10 | 110 | 11 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 5e-40 | 10 | 110 | 11 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Controls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP. {ECO:0000269|PubMed:12787254, ECO:0000269|PubMed:15821980}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009362272.1 | 4e-49 | PREDICTED: LOB domain-containing protein 36-like | ||||
Refseq | XP_018504232.1 | 4e-49 | PREDICTED: LOB domain-containing protein 36-like | ||||
Swissprot | Q9FKZ3 | 2e-41 | LBD36_ARATH; LOB domain-containing protein 36 | ||||
TrEMBL | A0A2P5DEA8 | 2e-46 | A0A2P5DEA8_PARAD; Lateral organ boundaries domain containing protein | ||||
STRING | XP_009362272.1 | 2e-48 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2353 | 34 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63090.4 | 2e-42 | LBD family protein |
Publications ? help Back to Top | |||
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