PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G034708.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family CO-like
Protein Properties Length: 494aa    MW: 53801.6 Da    PI: 5.3252
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G034708.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box27.94.8e-092568340
              zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                          +r C+ + +k+++++C  ++ +lC++C  + H+       H++v
  HL.SW.v1.0.G034708.1 25 ARACDSCVKKRARWYCAADDAFLCQSCDHSVHSAnslarrHERV 68
                          578*****************************657788888876 PP
2CCT68.12.4e-23441484144
                   CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                           Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++
  HL.SW.v1.0.G034708.1 441 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRS 484
                           9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011911.1352370IPR000315B-box-type zinc finger
SMARTSM003361.9E-92370IPR000315B-box-type zinc finger
PfamPF006432.4E-72568IPR000315B-box-type zinc finger
CDDcd000211.40E-102670No hitNo description
PROSITE profilePS5101716.083441483IPR010402CCT domain
PfamPF062036.8E-18441483IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 494 aa     Download sequence    Send to blast
MSTATTTSIY NNKKSSNGVV GGKTARACDS CVKKRARWYC AADDAFLCQS CDHSVHSANS  60
LARRHERVRL KTSSSRSPPP PLKLAAASDE LPSWHRGFTR KARTPRNGSH ASSIRGLKLS  120
NKPNGSSSGS SGTVPNPFSL VPEYCNGDET SNDENEEQLL YRVPIYDPFV AGQLCNSPAE  180
VSKSTSFGAN NDINGTSPDE EENNNNNNLQ GLLFPAQEMD DLAEFAADVE SLLGHGLEND  240
ACFGMEGLGF VDSKDERETT TTDPECASGE GRAVKVEEDE DEAMGGSFED MMREPFQLNL  300
DDYDESPAPS YGEEDAKVGL GMTVEVEIKG DNGNDANDVV KKNSSSTMML IKKKKKKKQI  360
LLRLDYEAVS TAWATQGGSP WTTGDRPDFD PDACLPECMM SSSTDAAQII NQSNNYLSNG  420
SGVVIGGLIN AAAAALGDEG REARVSRYRE KRRTRLFSKK IRYEVRKLNA EKRPRMKGRF  480
VKRSSYVPST ITN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1351357KKKKKKK
2451467RRTRLFSKKIRYEVRKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010103762.11e-143zinc finger protein CONSTANS-LIKE 16
TrEMBLA0A2P5FDR20.0A0A2P5FDR2_TREOI; Zinc finger-domain containing protein
STRINGXP_010103762.11e-143(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14733392
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.12e-77B-box type zinc finger protein with CCT domain