PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G034544.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | WRKY | ||||||||
Protein Properties | Length: 180aa MW: 19725.5 Da PI: 4.197 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 33.1 | 1.1e-10 | 159 | 179 | 2 | 22 |
--SS-EEEEEEE--TT-SS-E CS WRKY 2 dDgynWrKYGqKevkgsefpr 22 dDgy+WrKYGqK++k++++pr HL.SW.v1.0.G034544.1 159 DDGYKWRKYGQKSIKNTPNPR 179 8*******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.0E-9 | 150 | 179 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 13.081 | 153 | 179 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.27E-8 | 154 | 179 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.8E-7 | 159 | 179 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 180 aa Download sequence Send to blast |
MELLEEVIGS GSTSRDWSLS SSSGSGSEDE LVRELLDDVS PFFLIQEEST THNNIQNELL 60 LDDEDDDDDD DGVIISDQEV VTKINSANLL YSGPTIQDIE NALSVTAPKS QPHHQLSSSS 120 PAFRNSILER GLGLMSSKSI DNKYTLKIKS SATNNGMTDD GYKWRKYGQK SIKNTPNPR* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2P5DS38 | 3e-41 | A0A2P5DS38_TREOI; WRKY domain containing protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7118 | 34 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43290.1 | 1e-20 | WRKY DNA-binding protein 49 |