PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G034522.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family ERF
Protein Properties Length: 193aa    MW: 20732.8 Da    PI: 8.3167
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G034522.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.65.4e-173382255
                   AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                          +ykG+r +k +g+WvAeIr+p   +kr r++lg++ ta  Aa+a++ a  +l+g
  HL.SW.v1.0.G034522.1 33 QYKGIRMRK-WGKWVAEIREP---NKRSRIWLGSYSTAVAAARAYDTAVFYLRG 82
                          69*****99.**********9...336*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.2E-303291IPR001471AP2/ERF domain
SMARTSM003804.2E-383396IPR001471AP2/ERF domain
PROSITE profilePS5103222.33390IPR001471AP2/ERF domain
PfamPF008471.9E-103382IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-213391IPR016177DNA-binding domain
CDDcd000181.46E-253392No hitNo description
PRINTSPR003673.0E-113445IPR001471AP2/ERF domain
PRINTSPR003673.0E-117292IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
METAGPPPRE TTRKRAGGGG GGGGGVGGGG ERQYKGIRMR KWGKWVAEIR EPNKRSRIWL  60
GSYSTAVAAA RAYDTAVFYL RGPSARLNFP ELAQEGGGCG CAADMSAASI RKMATEVGAR  120
VDAHQAAIRH HHHHHLHNHH HLHNHHHSQS DSGEGAAEEL KPGTGFLNGV DLNKMPEPEN  180
SDGELEWDRN SD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-152499481Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00595DAPTransfer from AT5G67190Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015889855.13e-69ethylene-responsive transcription factor RAP2-10
RefseqXP_028764099.17e-69ethylene-responsive transcription factor ERF011-like
SwissprotQ9FH942e-55ERF10_ARATH; Ethylene-responsive transcription factor ERF010
TrEMBLA0A2P5D1L62e-81A0A2P5D1L6_TREOI; AP2/ERF domain containing protein
STRINGXP_010093506.12e-66(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF129032106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50260.18e-41cooperatively regulated by ethylene and jasmonate 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]