PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G034368.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family WRKY
Protein Properties Length: 173aa    MW: 19800.8 Da    PI: 5.6524
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G034368.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.31.2e-31111169159
                           ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                           ldDg++WrKYG+K+vk+s++pr+YYrC+  gCpvkk+ver++edp +v++tYeg Hnh+
  HL.SW.v1.0.G034368.1 111 LDDGFKWRKYGKKMVKNSPNPRNYYRCSVDGCPVKKRVERDREDPMYVITTYEGVHNHQ 169
                           59********************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.8E-3497169IPR003657WRKY domain
SuperFamilySSF1182902.35E-28104169IPR003657WRKY domain
PROSITE profilePS5081130.285106171IPR003657WRKY domain
SMARTSM007742.3E-37111170IPR003657WRKY domain
PfamPF031067.8E-25112169IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MMSGSPSSNT KFKSHMDQSP ENDNMVDDSS FDQFSEFLMF EEWPDEYRHQ EVSPVSQPAP  60
NTVTYATDEF GGSSSSLGGH NTTGENVQSG RQRMEVRERV AFKTKSEVEI LDDGFKWRKY  120
GKKMVKNSPN PRNYYRCSVD GCPVKKRVER DREDPMYVIT TYEGVHNHQS TF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-25101168774Probable WRKY transcription factor 4
2lex_A1e-25101168774Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008220527.11e-64PREDICTED: probable WRKY transcription factor 50 isoform X1
RefseqXP_010091969.11e-64probable WRKY transcription factor 50
SwissprotQ8VWQ51e-45WRK50_ARATH; Probable WRKY transcription factor 50
TrEMBLA0A2P5DEQ12e-69A0A2P5DEQ1_PARAD; WRKY domain containing protein
STRINGXP_008220527.14e-64(Prunus mume)
STRINGXP_010091969.16e-64(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF112034110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26170.16e-48WRKY DNA-binding protein 50
Publications ? help Back to Top
  1. Brand LH,Kirchler T,Hummel S,Chaban C,Wanke D
    DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro.
    Plant Methods, 2010. 6: p. 25
    [PMID:21108821]