PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G034368.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | WRKY | ||||||||
Protein Properties | Length: 173aa MW: 19800.8 Da PI: 5.6524 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 100.3 | 1.2e-31 | 111 | 169 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDg++WrKYG+K+vk+s++pr+YYrC+ gCpvkk+ver++edp +v++tYeg Hnh+ HL.SW.v1.0.G034368.1 111 LDDGFKWRKYGKKMVKNSPNPRNYYRCSVDGCPVKKRVERDREDPMYVITTYEGVHNHQ 169 59********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 8.8E-34 | 97 | 169 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.35E-28 | 104 | 169 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.285 | 106 | 171 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.3E-37 | 111 | 170 | IPR003657 | WRKY domain |
Pfam | PF03106 | 7.8E-25 | 112 | 169 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 173 aa Download sequence Send to blast |
MMSGSPSSNT KFKSHMDQSP ENDNMVDDSS FDQFSEFLMF EEWPDEYRHQ EVSPVSQPAP 60 NTVTYATDEF GGSSSSLGGH NTTGENVQSG RQRMEVRERV AFKTKSEVEI LDDGFKWRKY 120 GKKMVKNSPN PRNYYRCSVD GCPVKKRVER DREDPMYVIT TYEGVHNHQS TF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 1e-25 | 101 | 168 | 7 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 1e-25 | 101 | 168 | 7 | 74 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008220527.1 | 1e-64 | PREDICTED: probable WRKY transcription factor 50 isoform X1 | ||||
Refseq | XP_010091969.1 | 1e-64 | probable WRKY transcription factor 50 | ||||
Swissprot | Q8VWQ5 | 1e-45 | WRK50_ARATH; Probable WRKY transcription factor 50 | ||||
TrEMBL | A0A2P5DEQ1 | 2e-69 | A0A2P5DEQ1_PARAD; WRKY domain containing protein | ||||
STRING | XP_008220527.1 | 4e-64 | (Prunus mume) | ||||
STRING | XP_010091969.1 | 6e-64 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1120 | 34 | 110 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26170.1 | 6e-48 | WRKY DNA-binding protein 50 |
Publications ? help Back to Top | |||
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