PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G034357.1
Common Namemyb5
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family G2-like
Protein Properties Length: 379aa    MW: 41786.8 Da    PI: 7.5215
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G034357.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like1017.9e-32203258156
               G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                           k+r++W+peLH+rF++a++qLGGs+ AtPk+i+elmkv+gLt+++vkSHLQkYRl+
  HL.SW.v1.0.G034357.1 203 KQRRNWSPELHKRFLNALQQLGGSHAATPKQIRELMKVDGLTNDEVKSHLQKYRLH 258
                           79****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.351200260IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.1E-28200261IPR009057Homeodomain-like
SuperFamilySSF466893.97E-18201261IPR009057Homeodomain-like
TIGRFAMsTIGR015574.3E-27203258IPR006447Myb domain, plants
PfamPF002492.5E-8205256IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MQCSGMAFEK YIEALEVERK KIQVFQRELP LCLELVNQTI DRCKQQLSGT TTTEYVHGQS  60
ECSEQTSSEG HHVFEEFMPL KRSSSSDNDE EEEKEEQSPK RQTTEKDNKK KSDWLRSVQL  120
WNTTPDPVSS QKEELPKKAS VTEVKSNGGA FQPFQREKNV GKPNGTSSSA CTTPVASAPA  180
TSSNADGGSN KREEDKDGQN QRKQRRNWSP ELHKRFLNAL QQLGGSHAAT PKQIRELMKV  240
DGLTNDEVKS HLQKYRLHTR RPNPAIHNNG NAQTPQVVFV GGIWMQPSEY AATVGGSNDS  300
PNGAAANGVY APVAAPPQTA HHVAVHRQQM QNKHSSEHSH NNSEERGMSH SHSEGAVHSN  360
NSPSTSSSTH TTTTSPAF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A4e-13203256255Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B4e-13203256255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A4e-13203256255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C4e-13203256255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D4e-13203256255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F4e-13203256255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H4e-13203256255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J4e-13203256255Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phosphate signaling in roots. {ECO:0000250|UniProtKB:Q9FX67}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00160DAPTransfer from AT1G25550Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFR7515550.0FR751555.1 Humulus lupulus mRNA for myb transcription factor (myb5 gene), cultivar Osvald's 72, clone 3366.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010109406.11e-147transcription factor HHO3
SwissprotQ9FPE83e-99HHO3_ARATH; Transcription factor HHO3
TrEMBLG7ZLA40.0G7ZLA4_HUMLU; Myb transcription factor
STRINGXP_010109406.11e-146(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39183363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25550.17e-93G2-like family protein
Publications ? help Back to Top
  1. Nagarajan VK,Satheesh V,Poling MD,Raghothama KG,Jain A
    Arabidopsis MYB-Related HHO2 Exerts a Regulatory Influence on a Subset of Root Traits and Genes Governing Phosphate Homeostasis.
    Plant Cell Physiol., 2016. 57(6): p. 1142-52
    [PMID:27016098]