PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G034350.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | FAR1 | ||||||||
Protein Properties | Length: 249aa MW: 28432.3 Da PI: 7.3605 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 45.9 | 1.9e-14 | 46 | 132 | 1 | 91 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 ++Y+eY+ + F ++k+++ s ++++i t+ Cs+ gk++++k++ ++ + tr++Cka+++ + +d+k +++ + leHnH l HL.SW.v1.0.G034350.1 46 DYYREYGMQEDFVIKKKTTCAS-KDRKIRFLTLLCSRAGKSASQKQH---CLNPIPLTRVECKAMINDSILEDEKCKINLVILEHNHGL 130 59***************99999.6666***************99887...999***********************************9 PP FAR1 90 ap 91 +p HL.SW.v1.0.G034350.1 131 SP 132 86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 3.7E-11 | 46 | 132 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 1.7E-12 | 200 | 246 | IPR018289 | MULE transposase domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MDFAKQKSER VLDVQKEKDA RECLENLKSH ESESGMYFSS FNDLYDYYRE YGMQEDFVIK 60 KKTTCASKDR KIRFLTLLCS RAGKSASQKQ HCLNPIPLTR VECKAMINDS ILEDEKCKIN 120 LVILEHNHGL SPQKSRFYLC NREISLGAQR KLELNDRAGI SVVKNFQSFV VEVGDDKSRF 180 KNGFWVDARS KAIYEEFGDV VSFNTTYLTN NYDMPFAPFV GVNHYGQSIL LGCGLLSSET 240 TETFISIV* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015893354.1 | 2e-69 | protein FAR-RED IMPAIRED RESPONSE 1-like | ||||
Refseq | XP_024923569.1 | 2e-69 | protein FAR-RED IMPAIRED RESPONSE 1-like | ||||
TrEMBL | M5WNR6 | 1e-64 | M5WNR6_PRUPE; Uncharacterized protein | ||||
STRING | EMJ15417 | 2e-65 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF40 | 30 | 530 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80010.1 | 1e-32 | FAR1-related sequence 8 |