PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G034232.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family C2H2
Protein Properties Length: 446aa    MW: 49166.5 Da    PI: 9.8743
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G034232.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.16.6e-05212234223
                           EETTTTEEESSHHHHHHHHHH.T CS
               zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                           +Cp Cg+ F   +nL+ H+ + H
  HL.SW.v1.0.G034232.1 212 TCPECGEIFMKAENLELHQAVrH 234
                           8******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.182211239IPR007087Zinc finger, C2H2
PROSITE patternPS000280211234IPR007087Zinc finger, C2H2
SuperFamilySSF563998.15E-24236444No hitNo description
Gene3DG3DSA:3.90.228.109.7E-19237443IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MSSTMAKQKN QKKPSKQIQQ QSQKLESQKA EKPPSWAVVR GLLTCKYSQT QQPEEQKQQL  60
QQQQQLLKQQ QQQKLKQKQK QKLKQKQEQA IEQNAKKNKK MKCSGSLCSN TKVMHRPETG  120
SPELHKKKAS MGSTLPSNEA SNRSSMKAPL HELNGVVSTS SSSLSVSSNS SVGGSFRGMP  180
FRRFSGCYEC RMVVDPVLGF TRDPSLRSSI CTCPECGEIF MKAENLELHQ AVRHAVSELG  240
PEDTSTNIVE IIFQSSWLKK EAPICKIDRI LKVHNTQKTI SKFEEYREAI KAKATKLPKK  300
HPRCIADGNE LLRFHCATFM CSLGLNGSSN LCNSMPQCNV CSIIKNGFKV AGEPTGEGPG  360
KGILTTATSG KAHDHVGEAA GNEGEKRAML VCRVIAGRVK KNMEGSMEEY DSVAGAAGVY  420
SNLDELYVFN PKAILPCFVV IYTGF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018851366.10.0PREDICTED: uncharacterized protein LOC109013663
TrEMBLA0A2P5E5K80.0A0A2P5E5K8_TREOI; Zinc finger, C2H
STRINGXP_008233905.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84732128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.11e-102C2H2-like zinc finger protein