PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G034096.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family GATA
Protein Properties Length: 79aa    MW: 8265.12 Da    PI: 7.2572
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G034096.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA37.24.1e-121251135
                  GATA 11 lWRrgpdgnktLCnaCGlyyrkkgl 35
                          ++Rrgp g +tLCnaCGl+++ kg+
  HL.SW.v1.0.G034096.1  1 MMRRGPAGARTLCNACGLKWANKGV 25
                          68********************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF003204.8E-10125IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.2E-10130IPR013088Zinc finger, NHR/GATA-type
SMARTSM004016.5E-4136IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.52E-7141No hitNo description
CDDcd002029.84E-10242No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 79 aa     Download sequence    Send to blast
MMRRGPAGAR TLCNACGLKW ANKGVLRDLK VPNGGAQAAS LKETEQSDGD ANDPEAVNTT  60
TNMVSYNGDR DHKTTETG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010112233.17e-30GATA transcription factor 28
TrEMBLA0A2P5FKR35e-31A0A2P5FKR3_TREOI; GATA transcription factor
STRINGXP_010112233.13e-29(Morus notabilis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.13e-14ZIM-like 1