PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G033901.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | WRKY | ||||||||
Protein Properties | Length: 377aa MW: 40773.7 Da PI: 7.3586 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 96.4 | 1.9e-30 | 192 | 250 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gC ++k+ver+++dp ++++tY+ eHnh+ HL.SW.v1.0.G033901.1 192 SDIWAWRKYGQKPIKGSPYPRGYYRCSSSkGCLARKQVERNRTDPGMFIVTYTAEHNHP 250 79*************************998****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.4E-30 | 182 | 252 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 34.808 | 186 | 252 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 7.19E-26 | 189 | 252 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.6E-36 | 191 | 251 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.5E-25 | 193 | 250 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 377 aa Download sequence Send to blast |
MEVDWDLQAV VRGCSTAGAG VRASTTTTAT STTTSPVFMA DFQTTAASSS SFLFSSSSSP 60 SPFGSTSCNS SSISEHQSSG QLFLLPDPNS MRPRNFVVEE LHELYKPFFP KSHAQIQTPL 120 SSLSSICSST STSTTIRSND QIRQVKQHQH QHQHQPTTKQ SHNNGSTTTP RSKKRKNQLK 180 KVCQVPAESL SSDIWAWRKY GQKPIKGSPY PRGYYRCSSS KGCLARKQVE RNRTDPGMFI 240 VTYTAEHNHP APTHRNSLAG STRQKPSTPQ SISGTSDFNN PATKTSSPAT SGEEEVFVPQ 300 THSTTTESKD GPESVLMDDD DEDEFGLSDV AMSDDFFVGL EGLGSPTTGE FFSDNFPTSF 360 SLPWVANSAA TAAGGR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 5e-23 | 176 | 253 | 2 | 80 | Disease resistance protein RRS1 |
5w3x_D | 5e-23 | 176 | 253 | 2 | 80 | Disease resistance protein RRS1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00422 | DAP | Transfer from AT4G01250 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010092573.1 | 1e-150 | WRKY transcription factor 22 | ||||
TrEMBL | A0A2P5F036 | 1e-169 | A0A2P5F036_TREOI; WRKY domain containing protein | ||||
STRING | XP_010092573.1 | 1e-150 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4205 | 32 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01250.1 | 3e-79 | WRKY family protein |