PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G033730.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family NF-YA
Protein Properties Length: 341aa    MW: 37605.7 Da    PI: 8.9966
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G033730.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA96.52.9e-30188243258
             CBFB_NFYA   2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                            p+YVNaKQy++Il+RR+ Rakle+++k   k rkpylheSRh hAl+R+RgsgGrF
  HL.SW.v1.0.G033730.1 188 PPIYVNAKQYRAILRRRKFRAKLEAQNKF-LKVRKPYLHESRHLHALKRARGSGGRF 243
                           59***************************.9*************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005219.1E-34185246IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115233.87186246IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.3E-25189243IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.9E-22189211IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860191211IPR018362CCAAT-binding factor, conserved site
PRINTSPR006161.9E-22220243IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MQSLLKEDFG VRSVQSESQV FVGCSSWEGS TESHAQQSSV SKSLSLNMGV PTQHFHNTKQ  60
LIFQFQDQDS SSTQSTGQSH SEVASMKGNL YGNDMISTLS GYNETQGKTM GSHIKQVSSM  120
GNQDFVFPSQ LDYVQPIAHI PFGYGEPYFG GLLAAAAYGP HAVGHNSQAV GMAPARMPLP  180
LDLTEDEPPI YVNAKQYRAI LRRRKFRAKL EAQNKFLKVR KPYLHESRHL HALKRARGSG  240
GRFLNSKDVQ ESNHAPSGHG LHASSSARSH LNNKMKESVV QQLENYKDGS STTSCSEVTS  300
ASNSDDVFQQ QDFRFSGYPM HGHDVDSCRG VNQHHISTRR *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A2e-18187248263NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024022573.11e-164nuclear transcription factor Y subunit A-3 isoform X1
TrEMBLA0A2P5FEI51e-173A0A2P5FEI5_TREOI; Nuclear transcription factor Y subunit A
STRINGXP_010087689.11e-162(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101202541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.11e-42nuclear factor Y, subunit A3